Evidence map›Paper›PMID 39713392›Full record

ArticlebioRxiv : the preprint server for biology2024

A small molecule enhances arrestin-3 binding to the β

Han Kurt, Ali Akyol, Cagdas Devrim Son, Chen Zheng, Irene Gado, Massimiliano Meli, Erica Elisa Ferrandi, Ivan Bassanini, Francesca Vasile, Vsevolod V Gurevich and 4 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Han KurtIstanbul Medipol University, Graduate School of Engineering and Natural Sciences, 34810, Istanbul, Turkey.
Ali AkyolThe Middle East Technical University, Department of Biological Sciences, Ankara 06800, Turkey.
Cagdas Devrim SonThe Middle East Technical University, Department of Biological Sciences, Ankara 06800, Turkey.
Chen ZhengVanderbilt University, Department of Pharmacology, 37232, Nashville, TN, USA.
Irene GadoUniversity of Milano, Department of Chemistry, via Golgi 19, 20131 Milano, Italy.
Massimiliano MeliConsiglio Nazionale delle Ricerche, Istituto di Scienze e Tecnologie Chimiche "G. Natta" SCITEC, via Mario Bianco 9, 20131, Milano, Italy.
Erica Elisa FerrandiConsiglio Nazionale delle Ricerche, Istituto di Scienze e Tecnologie Chimiche "G. Natta" SCITEC, via Mario Bianco 9, 20131, Milano, Italy.
Ivan BassaniniConsiglio Nazionale delle Ricerche, Istituto di Scienze e Tecnologie Chimiche "G. Natta" SCITEC, via Mario Bianco 9, 20131, Milano, Italy.
Francesca VasileUniversity of Milano, Department of Chemistry, via Golgi 19, 20131 Milano, Italy.
Vsevolod V GurevichVanderbilt University, Department of Pharmacology, 37232, Nashville, TN, USA.
Aylin NebolIstanbul Medipol University, Research Institute for Health Sciences and Technologies (SABITA), Regenerative and Restorative Medical Research Center (REMER), 34810, Istanbul, Turkey.
Esra CagaviIstanbul Medipol University, Research Institute for Health Sciences and Technologies (SABITA), Regenerative and Restorative Medical Research Center (REMER), 34810, Istanbul, Turkey.
Giulia MorraConsiglio Nazionale delle Ricerche, Istituto di Scienze e Tecnologie Chimiche "G. Natta" SCITEC, via Mario Bianco 9, 20131, Milano, Italy.
Ozge SensoyIstanbul Medipol University, School of Engineering and Natural Sciences, Department of Biomedical Engineering, 34810, Istanbul, Turkey.

Funding

STRUCTURE/FUNCTION STUDIES OF VISUAL ARRESTINR01EY011500 · NEI · VANDERBILT UNIVERSITY · PI T M Iverson · 1997 to 2026
$12.3M
Targeted Engineering of Designer Arrestins to Regulate Cell SignalingR35GM122491 · NIGMS · VANDERBILT UNIVERSITY · PI GUREVICH, VSEVOLOD V. · 2017 to 2021
$2.6M
NEI NIH HHS R01 EY011500NIGMS NIH HHS R35 GM122491
6 · The paper itself

Abstract

G protein-coupled receptor (GPCR) signaling is terminated by arrestin binding to a phosphorylated receptor. Binding propensity has been shown to be modulated by stabilizing the pre-activated state of arrestin through point mutations or C-tail truncation. Here, we hypothesize that pre-activated rotated states can be stabilized by small molecules, and this can promote binding to phosphorylation-deficient receptors, which underly a variety of human disorders. We performed virtual screening on druggable pockets identified on pre-activated conformations in Molecular Dynamics trajectories of arrestin-3, and found a compound targeting an activation switch, the back loop at the inter-domain interface. According to our model, consistent with available biochemical and structural data, the compound destabilized the ionic lock between the finger and the back loop, and enabled transition of the `gate loop` towards the pre-activated state, which stabilizes pre-activated inter-domain rotation. The predicted binding pocket is consistent with saturation-transfer difference NMR data indicating close contact between the piperazine moiety of the compound and C/finger loops. The compound increases in-cell arrestin-3 binding to phosphorylation-deficient and wild-type β

Indexed as

arrestin-3FRETmolecular dynamicsNanoBITpre-activationSTD NMRβ2-adrenergic receptor

Identifiers

PMID39713392
PMCPMC11661165

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.