Evidence map›Paper›PMID 39713327›Full record

ArticlebioRxiv : the preprint server for biology2024

Defining a highly conserved B cell epitope in the receptor binding motif of SARS-CoV-2 spike glycoprotein.

Sameer Kumar Malladi, Deepika Jaiswal, Baoling Ying, Wafaa B Alsoussi, Tamarand L Darling, Bernadeta Dadonaite, Alesandro Civljak, Stephen C Horvath, Julian Q Zhou, Wooseob Kim and 20 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors.

Sameer Kumar MalladiDepartment of Pathology and Immunology, Washington University School of Medicine; St. Louis, MO, USA.ORCID 0000-0001-5131-4518
Deepika JaiswalDepartment of Microbiology, Icahn School of Medicine at Mount Sinai; New York, NY, USA.ORCID 0000-0002-9565-1302
Baoling YingDepartment of Medicine, Washington University School of Medicine; St. Louis, MO, USA.ORCID 0000-0002-9344-9004
Wafaa B AlsoussiDepartment of Pathology and Immunology, Washington University School of Medicine; St. Louis, MO, USA.ORCID 0000-0002-5805-4461
Tamarand L DarlingDepartment of Medicine, Washington University School of Medicine; St. Louis, MO, USA.ORCID 0000-0003-4914-8228
Bernadeta DadonaiteBasic Sciences Division and Computational Biology Program, Fred Hutchinson Cancer Center; Seattle, WA, USA.ORCID 0000-0003-0908-6982
Alesandro CivljakDepartment of Microbiology, Icahn School of Medicine at Mount Sinai; New York, NY, USA.
Stephen C HorvathDepartment of Pathology and Immunology, Washington University School of Medicine; St. Louis, MO, USA.
Julian Q ZhouDepartment of Pathology and Immunology, Washington University School of Medicine; St. Louis, MO, USA.ORCID 0000-0001-9602-2092
Wooseob KimDepartment of Pathology and Immunology, Washington University School of Medicine; St. Louis, MO, USA.ORCID 0000-0002-9199-1000
Jackson S TurnerDepartment of Pathology and Immunology, Washington University School of Medicine; St. Louis, MO, USA.ORCID 0000-0002-4396-6265
Aaron J SchmitzDepartment of Pathology and Immunology, Washington University School of Medicine; St. Louis, MO, USA.ORCID 0000-0002-8077-6751
Fangjie HanDepartment of Pathology and Immunology, Washington University School of Medicine; St. Louis, MO, USA.
Suzanne M ScheafferDepartment of Medicine, Washington University School of Medicine; St. Louis, MO, USA.
Christopher W FarnsworthDepartment of Pathology and Immunology, Washington University School of Medicine; St. Louis, MO, USA.
Raffael NachbagauerModerna, Inc.; Cambridge, MA, USA.ORCID 0000-0001-5568-5420
Biliana NestorovaModerna, Inc.; Cambridge, MA, USA.
Spyros ChalkiasModerna, Inc.; Cambridge, MA, USA.ORCID 0000-0002-6254-1158
Michael K KlebertClinical Trials Unit, Washington University School of Medicine; St. Louis, MO, USA.
Darin K EdwardsModerna, Inc.; Cambridge, MA, USA.ORCID 0000-0002-2065-2941
Robert ParisModerna, Inc.; Cambridge, MA, USA.ORCID 0000-0003-3234-5989
Benjamin S StrnadMallinckrodt Institute of Radiology, Washington University School of Medicine; St. Louis, MO, USA.ORCID 0000-0003-2308-1299
William D MiddletonMallinckrodt Institute of Radiology, Washington University School of Medicine; St. Louis, MO, USA.
Jane A O'HalloranDivision of Infectious Diseases, Washington University School of Medicine; St. Louis, MO, USA.ORCID 0000-0001-8265-9471
Rachel M PrestiDivision of Infectious Diseases, Washington University School of Medicine; St. Louis, MO, USA.
Jesse D BloomBasic Sciences Division and Computational Biology Program, Fred Hutchinson Cancer Center; Seattle, WA, USA.ORCID 0000-0003-1267-3408
Adrianus C M BoonDepartment of Pathology and Immunology, Washington University School of Medicine; St. Louis, MO, USA.ORCID 0000-0002-4700-8224
Michael S DiamondDepartment of Pathology and Immunology, Washington University School of Medicine; St. Louis, MO, USA.ORCID 0000-0002-8791-3165
Goran BajicDepartment of Microbiology, Icahn School of Medicine at Mount Sinai; New York, NY, USA.ORCID 0000-0003-0480-4324
Ali H EllebedyDepartment of Pathology and Immunology, Washington University School of Medicine; St. Louis, MO, USA.ORCID 0000-0002-6129-2532

Funding

COLLABORATIVE INFLUENZA VACCINE INNOVATION CENTER: UNIVERSAL INFLUENZA VACCINE RESEARCH75N93019C00051 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KRAMMER, FLORIAN · 2019 to 2025
$105.4M
NIAID Centers of Excellence for Influenza Research and Response: Universal Influenza Vaccine Research Activities75N93021C00016 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI WEBBY, RICHARD · 2021 to 2025
$91.4M
Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI MARK Reid PHILIPS · 1985 to 2026
$83.1M
NIAID Centers of Excellence for Influenza Research and Response: Universal Influenza Vaccine Research Activities75N93021C00014 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI GARCIA-SASTRE, ADOLFO · 2021 to 2025
$62.6M
Conduits: Mount Sinai Health System Translational Science HubUL1TR004419 · NCATS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Rosalind J Wright · 2022 to 2026
$46.4M
The Development and Evaluation of Pan-Coronavirus VaccinesP01AI168347 · NIAID · WASHINGTON UNIVERSITY · PI Michael S Diamond · 2022 to 2026
$15.9M
Understanding antibody responses and defining correlates of protection for endemic and pandemic coronavirus strainsP01AI172531 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Ali Hassan Ellebedy, Viviana A Simon · 2023 to 2026
$12.5M
Structural interrogation of vaccine- and infection-induced B cell responsesR01AI168178 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Goran Bajic · 2022 to 2026
$3.9M
COVID and Translational Science supercomputer (CATS)S10OD030463 · OD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KOVATCH, PATRICIA · 2021 to 2021
$2.0M
Big Omics Data Engine 2 SupercomputerS10OD026880 · OD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KOVATCH, PATRICIA · 2019 to 2019
$2.0M
NCATS NIH HHS UL1 TR004419NCI NIH HHS P30 CA016087NIAID NIH HHS 75N93019C00051NIAID NIH HHS 75N93021C00014NIAID NIH HHS 75N93021C00016NIAID NIH HHS P01 AI168347NIAID NIH HHS P01 AI172531NIAID NIH HHS R01 AI168178NIH HHS S10 OD026880NIH HHS S10 OD030463
6 · The paper itself

Abstract

SARS-CoV-2 mRNA vaccines induce robust and persistent germinal centre (GC) B cell responses in humans. It remains unclear how the continuous evolution of the virus impacts the breadth of the induced GC B cell response. Using ultrasound-guided fine needle aspiration, we examined draining lymph nodes of nine healthy adults following bivalent booster immunization. We show that 77.8% of the B cell clones in the GC expressed as representative monoclonal antibodies recognized the spike protein, with a third (37.8%) of these targeting the receptor binding domain (RBD). Strikingly, only one RBD-targeting mAb, mAb-52, neutralized all tested SARS-CoV-2 strains, including the recent KP.2 variant. mAb-52 utilizes the IGHV3-66 public clonotype, protects hamsters challenged against the EG.5.1 variant and targets the class I/II RBD epitope, closely mimicking the binding footprint of ACE2. Finally, we show that the remarkable breadth of mAb-52 is due to the somatic hypermutations accumulated within vaccine-induced GC reaction.

Identifiers

PMID39713327
PMCPMC11661108

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.