Evidence map›Paper›PMID 39713313›Full record

ArticlebioRxiv : the preprint server for biology2025

Zheng-Qing Fu, Brian V Geisbrecht, Samuel Bouyain, Fred Dyda, John Chrzas, Palani Kandavelu, Darcie J Miller, Bi-Cheng Wang

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Zheng-Qing FuSER-CAT, Advanced Photon Source, Argonne National Laboratory Argonne, IL 60439, USA.
Brian V GeisbrechtDepartment of Biochemistry & Molecular Biophysics, Kansas State University Manhattan, KS 66506 USA.
Samuel BouyainDivision of Biological and Biomedical Systems, School of Science and Engineering, University of Missouri - Kansas City Kansas City, MO 64110, USA.ORCID 0000-0002-7499-738X
Fred DydaLaboratory of Molecular Biology, The National Institute of Diabetes and Digestive and Kidney Diseases Bethesda, MD 20892-0560. USA.
John ChrzasSER-CAT, Advanced Photon Source, Argonne National Laboratory Argonne, IL 60439, USA.
Palani KandaveluSER-CAT, Advanced Photon Source, Argonne National Laboratory Argonne, IL 60439, USA.
Darcie J MillerDepartment of Structural Biology, St. Jude Children's Research Hospital Memphis, TN 38105.
Bi-Cheng WangSER-CAT, Advanced Photon Source, Argonne National Laboratory Argonne, IL 60439, USA.

Funding

Structure/Function Studies of Enzyme Inhibitors and their Roles in Innate Immune EvasionR35GM140852 · NIGMS · KANSAS STATE UNIVERSITY · PI Brian V Geisbrecht · 2021 to 2026
$2.3M
Structure and function of contactin-ligand complexesR15NS108371 · NINDS · UNIVERSITY OF MISSOURI KANSAS CITY · PI BOUYAIN, SAMUEL · 2018 to 2018
$457k
NIGMS NIH HHS R35 GM140852NINDS NIH HHS R15 NS108371
6 · The paper itself

Abstract

X-ray crystal diffraction has provided atomic-level structural information on biological macromolecules. Data quality determines the reliability of structural models. In most cases, multiple data sets are available from different crystals and/or collected with different experimental settings. Reliable metrics are critical to rank and select the data set with the highest quality. Many measures have been created or modified for data quality evaluation. However, some are duplicate in functionality, and some are likely misused due to misunderstanding, which causes confusion or problems, especially at synchrotron beamlines where experiments proceed quickly. In this work, these measures are studied through both theoretical analysis and experimental data with various characteristics, which demonstrated that: 1). {Rmerg, Rmeas, Rpim, CC1/2} all measure the equivalence of reflections, and the low-shell values of these metrics can be used as reliable indicators for correctness (or trueness) of Laue symmetry; 2). High-shell

Identifiers

PMID39713313
PMCPMC11661158

What OpenQuestion holds

Textmetadata
LicenceCC BY-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.