Evidence map›Paper›PMID 39712025›Full record

ArticleFrontiers in immunology2024

Common diagnostic biomarkers and molecular mechanisms of

Minglin Zhang, Tong Liu, Lijun Luo, Yi Zhang, Qijiao Chen, Fen Wang, Yuxin Xie

Abstract read
In one paragraph

Article in Frontiers in immunology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Minglin Zhang *Department of Gastroenterology, The Third Xiangya Hospital, Central South University, Changsha, Hunan, China.
Tong Liu *Department of General Surgery, Zhongshan Hospital of Traditional Chinese Medicine Affiliated to Guangzhou University of Traditional Chinese Medicine, Zhongshan, Guangdong, China.
Lijun LuoSchool of Medical Laboratory Science, Hebei North University, Zhangjiakou, Hebei, China.
Yi ZhangDepartment of General Surgery, The First People's Hospital of Qingzhen City, Guiyang, Guizhou, China.
Qijiao ChenDepartment of Infectious Diseases, Affiliated Hospital of Zunyi Medical University, Zunyi, Guizhou, China.
Fen WangDepartment of Gastroenterology, The Third Xiangya Hospital, Central South University, Changsha, Hunan, China.
Yuxin XieDepartment of Infectious Diseases, Affiliated Hospital of Zunyi Medical University, Zunyi, Guizhou, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Methods: The following matrix data were downloaded from the GEO database: Results: Using the GSE233973 and GSE3365 datasets, 151 differentially expressed genes (DEGs) were identified. GO enrichment analysis revealed involvement in leukocyte migration and chemotaxis, response to lipopolysaccharides, response to biostimulatory stimuli, and regulation of interleukin-8 (IL-8) production. Ten Hub genes (TLR4, IL10, CXCL8, IL1B, TLR2, CXCR2, CCL2, IL6, CCR1 and MMP-9) were identified via the PPI network and Cytoscape software. Enrichment analysis of the Hub genes focused on the lipopolysaccharide response, bacterial molecular response, biostimulatory response and leukocyte movement. Validation using the GSE27411 and GSE179285 datasets revealed that MMP-9 was significantly upregulated in both the Conclusion: Our study revealed the co-pathogenic mechanism between

Indexed as

BiomarkersHelicobacter InfectionsHelicobacter pyloriInflammatory Bowel DiseasesProtein Interaction MapsComputational BiologyDatabases, GeneticGene Expression ProfilingGene Regulatory NetworksHumansBiomarkersbioinformatics analysisdiagnostic biomarkersHelicobacter pyloriinflammatory bowel diseasemolecular mechanism

Identifiers

PMID39712025
PMCPMC11659760

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.