ArticlemedRxiv : the preprint server for health sciences2024
Development and Evaluation of Machine Learning Models for the Detection of Emergency Department Patients with Opioid Misuse from Clinical Notes.
Article in medRxiv : the preprint server for health sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT07498322 (Chicago Data-driven Opioid Use Disorder Screening, Engagement, Treatment and Planning System), which is not on this map. Not yet cited in PubMed.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Chicago Data-driven Opioid Use Disorder Screening, Engagement, Treatment and Planning System
Who cites it
0 citing papers in PubMed.
No citing paper in PubMed yet.
Corrections and comments
- Updated by
Authors and funding
10 authors.
Funding
Abstract
Objectives: The accurate identification of Emergency Department (ED) encounters involving opioid misuse is critical for health services, research, and surveillance. We sought to develop natural language processing (NLP)-based models for the detection of ED encounters involving opioid misuse. Methods: A sample of ED encounters enriched for opioid misuse was manually annotated and clinical notes extracted. We evaluated classic machine learning (ML) methods, fine-tuning of publicly available pretrained language models, and a previously developed convolutional neural network opioid classifier for use on hospitalized patients (SMART-AI). Performance was compared to ICD-10-CM codes. Both raw text and text transformed to the United Medical Language System were evaluated. Face validity was evaluated by term feature importance. Results: There were 1123 encounters used for training, validation, and testing. Of the classic ML methods, XGBoost had the highest AU_PRC (0.936), accuracy (0.887), and F1 score (0.863) which outperformed ICD-10-CM codes [accuracy 0.870; F1 0.830]. Logistic regression, support vector machine, and XGBoost models had higher AU_PRC using transformed text, while decision trees performed better using raw text. Excluding XGBoost, fine-tuned pre-trained language models outperformed classic ML methods. The best performing model was the fine-tuned SMART-AI based model with domain adaptation [AU_PRC 0.948; accuracy 0.882; F1 0.851]. Explainability analyses showed the most predictive terms were 'heroin', 'opioids', 'alcoholic intoxication, chronic', 'cocaine', 'opiates', and 'suboxone'. Conclusions: NLP-based models outperform entry of ICD-10-CM diagnosis codes for the detection of ED encounters with opioid misuse. Fine tuning with domain adaptation for pre-trained language models resulted in improved performance.
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.