Evidence map›Paper›PMID 39711573›Full record

ArticleResearch square2024

Long-read epigenomic diagnosis and prognosis of Acute Myeloid Leukemia.

Jatinder Lamba, Francisco Marchi, Marieke Landwehr, Ann-Kathrin Schade, Vivek Shastri, Matin Ghavami, Fernando Sckaff, Richard Marrero, Nam Nguyen, Vikash Mansinghka and 16 more

Abstract readPreprint
In one paragraph

Article in Research square, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

26 authors.

Jatinder LambaUniversity of Florida.ORCID https://orcid.org/0000-0003-0411-0007
Francisco MarchiUniversity of Florida.ORCID https://orcid.org/0000-0002-7318-9137
Marieke LandwehrUniversity of Florida.
Ann-Kathrin SchadeUniversity of Florida.
Vivek ShastriUniversity of Florida.ORCID https://orcid.org/0009-0003-1105-1575
Matin GhavamiMassachusetts Institute of Technology.
Fernando SckaffUniversity of Florida.
Richard MarreroUniversity of Florida College of Pharmacy.ORCID https://orcid.org/0000-0002-0789-1075
Nam NguyenUniversity of Florida.ORCID https://orcid.org/0000-0003-3036-4748
Vikash MansinghkaMassachusetts Institute of Technology.
Xueyuan CaoUniversity of Tennessee Health Science Center.ORCID https://orcid.org/0000-0002-4396-7460
William SlaytonUniversity of Florida.
Petr StarostikUniversity of Florida.
Raul RibeiroSt. Jude Children's Hospital.ORCID https://orcid.org/0000-0002-9956-5647
Jeffrey RubnitzSt. Jude Children's Research Hospital.
Jeffery KlcoSt. Jude Children's Research Hospital.ORCID https://orcid.org/0000-0003-2961-6960
Alan GamisChildren's Mercy Hospitals and Clinics.
Timothy TricheVan Andel Institute.ORCID https://orcid.org/0000-0001-5665-946X
Rhonda RiesFred Hutchinson Cancer Center.ORCID https://orcid.org/0000-0002-3702-7923
Edwards Anders KolbLeukemia Lymphoma Society.
Richard AplencChildren's Hospital of Philadelphia.
Todd AlonzoUniversity of Southern California.
Stanley PoundsSt. Jude Children's Research Hospital.ORCID https://orcid.org/0000-0002-9167-2114
Soheil MeshinchiFred Hutchinson Cancer Research Center.
Christopher CogleUniversity of Florida.
Abdelrahman ElsayedSt. Jude Children's Research Hospital.

Funding

NCTN BIQSFP ANBL1531 (NRT)U10CA180886 · NCI · PUBLIC HEALTH INSTITUTE · PI Douglas S. Hawkins · 2014 to 2026
$390.6M
COG FOREIGN ACCRUALU10CA098543 · NCI · NATIONAL CHILDHOOD CANCER FOUNDATION · PI ADAMSON, PETER C. · 2003 to 2013
$335.5M
COG SDMC - Statistics CoreU10CA180899 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI TODD A ALONZO · 2014 to 2026
$132.8M
Children's Oncology Group Statistics &Data Center GrantU10CA098413 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI DEVIDAS, MEENAKSHI · 2003 to 2013
$67.5M
University of Florida Health Cancer Center Support GrantP30CA247796 · NCI · UNIVERSITY OF FLORIDA · PI Alison Ivey · 2023 to 2026
$10.9M
Pharmacogenomics of Ara-C in AMLR01CA132946 · NCI · UNIVERSITY OF MINNESOTA · PI LAMBA, JATINDER K., POUNDS, STANLEY BARRETT · 2008 to 2025
$5.3M
NCI NIH HHS P30 CA247796NCI NIH HHS R01 CA132946NCI NIH HHS U10 CA098413NCI NIH HHS U10 CA098543NCI NIH HHS U10 CA180886NCI NIH HHS U10 CA180899
6 · The paper itself

Abstract

Acute Myeloid Leukemia (AML) is an aggressive cancer with dismal outcomes, vast subtype heterogeneity, and suboptimal risk stratification. In this study, we harmonized DNA methylation data from 3,314 patients across 11 cohorts to develop the Acute Leukemia Methylome Atlas (ALMA) of diagnostic relevance that predicted 27 WHO 2022 acute leukemia subtypes with an overall accuracy of 96.3% in discovery and 90.1% in validation cohorts. Specifically, for AML, we also developed

Identifiers

PMID39711573
PMCPMC11661290

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.