Effects of seasonal climates and MIPS1 mutations on soybean germination through multi-omics analysis.

Huakun Yu, Longming Zhu, Yuhao Chen, Ping Deng, Bei Liu, Xiaochao Chen, Fengjie Yuan

Abstract read

In one paragraph

Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it

0cells of the map it votes in

0citing papers in PubMed

–field-weighted citation impact

1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Huakun Yu *Biobreeding Institute, Xianghu Laboratory, Hangzhou, 311231, China.

Longming Zhu *Institute of Crop and Nuclear Technology Utilization, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China.

Yuhao Chen *Biobreeding Institute, Xianghu Laboratory, Hangzhou, 311231, China.

Ping DengBiobreeding Institute, Xianghu Laboratory, Hangzhou, 311231, China.

Bei LiuBiobreeding Institute, Xianghu Laboratory, Hangzhou, 311231, China.

Xiaochao ChenBiobreeding Institute, Xianghu Laboratory, Hangzhou, 311231, China.

Fengjie YuanBiobreeding Institute, Xianghu Laboratory, Hangzhou, 311231, China. fjyuanhz@126.com.

Funding

Central Government Guided Local Science and Technology Development Funds 2023ZY1016Zhejiang Provincial Major Agriculture Science and Technology Special 2021C02064-5

6 · The paper itself

Abstract

This study delves into the combined effects of seasonal climate variations and MIPS1 gene mutations on the germination rates of soybean cultivars TW-1 and TW75. Through comprehensive metabolomic and transcriptomic analyses, we identified key KEGG pathways significantly affected by these factors, including starch and sucrose metabolism, lipid metabolism, and amino acid biosynthesis. These pathways were notably disrupted during the spring, leading to an imbalance in metabolic reserves critical for seedling development. Additionally, MIPS1 gene mutations further altered these pathways, exacerbating the metabolic disturbances. Our results underscore the intricate network of environmental and genetic interactions influencing soybean seed vigor and underscore the importance of understanding these pathways to enhance agricultural resilience and seed quality in fluctuating climates.

Indexed as

GerminationGlycine maxMutationSeasonsClimateGene Expression ProfilingGene Expression Regulation, PlantMetabolomicsMultiomicsPlant ProteinsSeedsPlant ProteinsLow phytic acidMIPS1 mutationMulti-omicsSeasonal climate variationSoybean germination

Identifiers

PMID39710639

DOI10.1186/s12870-024-05957-x

PMCPMC11665057

What OpenQuestion holds

Textmetadata

LicenceCC BY-NC-ND

Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.