Evidence map›Paper›PMID 39709469›Full record

ArticleBMC research notes2024

Genome sequence of the Mediterranean red coral Corallium rubrum.

Philippe Ganot, Tobias Rausch, Markus Hsi-Yang Fritz, Didier Zoccola, Xin Wang, Manuel Aranda, Vladimir Benes, Denis Allemand, Sylvie Tambutté

Abstract read
In one paragraph

Article in BMC research notes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Philippe GanotResearch Unit on the Biology of Precious Corals CSM-CHANEL, 8 Quai Antoine 1er, Monaco, Principality of Monaco. pganot@centrescientifique.mc.
Tobias RauschEMBL, Genomics Core Facility, Meyerhofstraße 1, 69117, Heidelberg, Germany.
Markus Hsi-Yang FritzEMBL, Genomics Core Facility, Meyerhofstraße 1, 69117, Heidelberg, Germany.
Didier ZoccolaDepartment of Marine Biology, CSM, Centre Scientifique de Monaco, 8 Quai Antoine 1er, Monaco, Principality of Monaco.
Xin WangMarine Science Program, BESE, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Kingdom of Saudi Arabia.
Manuel ArandaMarine Science Program, BESE, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Kingdom of Saudi Arabia.
Vladimir BenesEMBL, Genomics Core Facility, Meyerhofstraße 1, 69117, Heidelberg, Germany.
Denis AllemandResearch Unit on the Biology of Precious Corals CSM-CHANEL, 8 Quai Antoine 1er, Monaco, Principality of Monaco.
Sylvie TambuttéResearch Unit on the Biology of Precious Corals CSM-CHANEL, 8 Quai Antoine 1er, Monaco, Principality of Monaco.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesCorallium rubrum, the precious red coral, is an octocoral endemic to the western Mediterranean Sea. Like most octocorals, it produces tiny, calcified structures called sclerites. Uniquely, it also produces a completely calcified axial skeleton that is a bright red color. This combination of color and hardness has made the red coral prized for centuries, leading to extensive fishing and trade for use in jewelry. Understanding how it produces this red skeleton is thus a central question in economics, culture, and biology. To gain insights into this process, we sequenced the C. rubrum genome. DATA DESCRIPTION: Our C. rubrum genome assembly is 655 megabases (Mb) in size, distributed across 2910 scaffolds with a very low level of unknown nucleotides (0.95%). We used a pipeline based on the MaSuRCA hybrid assembler, combining long PacBio reads and short Illumina reads, followed by several steps to improve the assembly, including scaffolding, merging, and polishing. This represents the third published genome of an octocoral and the first within the order Scleralcyonacea.

Indexed as

AnthozoaGenomeAnimalsMediterranean SeaSequence Analysis, DNAWhole Genome SequencingBiomineralizationCalcificationHybrid Illumina PacBioMaSuRCAOctocoralPrecious coralsScleralcyonacea

Identifiers

PMID39709469
PMCPMC11662758

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.