Evidence map›Paper›PMID 39707494›Full record

ArticleMicrobiome2024

Gastrointestinal jumbo phages possess independent synthesis and utilization systems of NAD

Cunyuan Li, Kaiping Liu, Chengxiang Gu, Ming Li, Ping Zhou, Linxing Chen, Shize Sun, Xiaoyue Li, Limin Wang, Wei Ni and 2 more

Abstract read
In one paragraph

Article in Microbiome, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. The biology of jumbo phages.Nature communications · 2026
    Review
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  4. Article
  5. Review
  6. Article
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Cunyuan Li *College of Life Sciences, Shihezi University, Shihezi, Xinjiang, 832003, China.
Kaiping Liu *College of Life Sciences, Shihezi University, Shihezi, Xinjiang, 832003, China.
Chengxiang Gu *Archaeal Biology Center, Synthetic Biology Research Center, Shenzhen Key Laboratory of Marine Microbiome Engineering, Key Laboratory of Marine Microbiome Engineering, Institute for Advanced Study, Guangdong Higher Education Institutes, Shenzhen University, Shenzhen, China.
Ming LiZoology and Evolutionary Biology, Department of Biology, University of Konstanz, Universitätsstrasse 10, Constance, 78457, Germany.
Ping ZhouState Key Laboratory of Sheep Genetic Improvement and Healthy Production, Xinjiang Academy of Agricultural and Reclamation Science, Xinjiang, 832003, China.
Linxing ChenDepartment of Earth and Planetary Sciences, University of California, Berkeley, CA, USA.
Shize SunCollege of Life Sciences, Shihezi University, Shihezi, Xinjiang, 832003, China.
Xiaoyue LiCollege of Life Sciences, Shihezi University, Shihezi, Xinjiang, 832003, China.
Limin WangState Key Laboratory of Sheep Genetic Improvement and Healthy Production, Xinjiang Academy of Agricultural and Reclamation Science, Xinjiang, 832003, China.
Wei NiCollege of Life Sciences, Shihezi University, Shihezi, Xinjiang, 832003, China. niweiwonderful@sina.com.
Meng LiArchaeal Biology Center, Synthetic Biology Research Center, Shenzhen Key Laboratory of Marine Microbiome Engineering, Key Laboratory of Marine Microbiome Engineering, Institute for Advanced Study, Guangdong Higher Education Institutes, Shenzhen University, Shenzhen, China. limeng848@szu.edu.cn.
Shengwei HuCollege of Life Sciences, Shihezi University, Shihezi, Xinjiang, 832003, China. hushengwei@163.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundJumbo phages, phages with genomes > 200 kbp, contain some unique genes for successful reproduction in their bacterial hosts. Due to complex and massive genomes analogous to those of small-celled bacteria, how jumbo phages complete their life cycle remains largely undefined.

resultsIn this study, we assembled 668 high-quality jumbo phage genomes from over 15 terabytes (TB) of intestinal metagenomic data from 955 samples of 5 animal species (cow, sheep, pig, horse, and deer). Within them, we obtained a complete genome of 716 kbp in length, which is the largest phage genome so far reported in the gut environments. Interestingly, 174 out of the 668 jumbo phages were found to encode all genes required for the synthesis of NAD

conclusionIn summary, this study expands our understanding of the diversity and survival strategies of phages, and an in-depth study of the NAD-jumbo phages is crucial for understanding their role in ecological regulation. Video Abstract.

Indexed as

BacteriophagesGenome, ViralNADPhylogenyAnimalsBacteriaCattleDeerDNA ReplicationGastrointestinal MicrobiomeHorsesHumansMetagenomicsSheepSwineNADAnimal gutBacteriophageJumbo phageMetagenomeNAD+

Identifiers

PMID39707494
PMCPMC11662467

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.