Evidence map›Paper›PMID 39707270›Full record

ArticleBMC medical research methodology2024

Efficient analysis of drug interactions in liver injury: a retrospective study leveraging natural language processing and machine learning.

Junlong Ma, Heng Chen, Ji Sun, Juanjuan Huang, Gefei He, Guoping Yang

Abstract read
In one paragraph

Article in BMC medical research methodology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 2 syntheses or guidelines pooled it.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Junlong MaCenter of Clinical Pharmacology, Third Xiangya Hospital, Central South University, Changsha, Hunan, China.
Heng ChenDepartment of Pharmacy, The First Hospital of Changsha, Central South University, Changsha, Hunan, China.
Ji SunDepartment of Pharmacy, The First Hospital of Changsha, Central South University, Changsha, Hunan, China.
Juanjuan HuangDepartment of Pharmacy, The First Hospital of Changsha, Central South University, Changsha, Hunan, China.
Gefei HeDepartment of Pharmacy, The First Hospital of Changsha, Central South University, Changsha, Hunan, China. 326366726@qq.com.
Guoping YangCenter of Clinical Pharmacology, Third Xiangya Hospital, Central South University, Changsha, Hunan, China. ygp9880@126.com.ORCID 0000-0001-5930-586X

Funding

Hunan Provincial Natural Science Foundation of China 2023JJ60513
6 · The paper itself

Abstract

backgroundLiver injury from drug-drug interactions (DDIs), notably with anti-tuberculosis drugs such as isoniazid, poses a significant safety concern. Electronic medical records contain comprehensive clinical information and have gained increasing attention as a potential resource for DDI detection. However, a substantial portion of adverse drug reaction (ADR) information is hidden in unstructured narrative text, which has yet to be efficiently harnessed, thereby introducing bias into the research. There is a significant need for an efficient framework for the DDI assessment.

methodsUsing a Chinese natural language processing (NLP) model, we extracted 25,130 adverse drug reaction (ADR) records, dividing them into sets for training an automated normalization model. The trained models, in conjunction with liver function laboratory tests, were used to thoroughly and efficiently identify liver injury cases. Ultimately, we applied a case-control study design to detect DDI signals increasing isoniazid's liver injury risk.

resultsThe Logistic Regression model demonstrated stable and superior performance in classification task. Based on laboratory criteria and NLP, we identified 128 liver injury cases among a cohort of 3,209 patients treated with isoniazid. Preliminary screening of 113 drug combinations with isoniazid highlighted 20 potential signal drugs, with antibacterials constituting 25%. Sensitivity analysis confirmed the robustness of signal drugs, especially in cardiac therapy and antibacterials.

conclusionOur NLP and machine learning approach effectively identifies isoniazid-related DDIs that increase the risk of liver injury, identifying 20 signal drugs, mainly antibacterials. Further research is required to validate these DDI signals.

Indexed as

Antitubercular AgentsChemical and Drug Induced Liver InjuryDrug InteractionsIsoniazidMachine LearningNatural Language ProcessingAdultCase-Control StudiesDrug-Related Side Effects and Adverse ReactionsElectronic Health RecordsFemaleHumansLogistic ModelsMaleMiddle AgedRetrospective StudiesAntitubercular AgentsIsoniazidDrug interactionLiver injuryMachine learningNatural language processingRetrospective study

Identifiers

PMID39707270
PMCPMC11660714

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.