Evidence map›Paper›PMID 39706338›Full record

ArticleAnnals of oncology : official journal of the European Society for Medical Oncology2025

Prognostic value of residual disease (RD) biology and gene expression changes during the neoadjuvant treatment in patients with HER2-positive early breast cancer (EBC).

A Fernandez-Martinez, M Tanioka, S G Ahn, P Zagami, T Pascual, M Rediti, G Tang, K A Hoadley, D Venet, N U Rashid and 13 more

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Article in Annals of oncology : official journal of the European Society for Medical Oncology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

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5citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

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2 · The registry

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

23 authors.

A Fernandez-MartinezLineberger Comprehensive Center, University of North Carolina, Chapel Hill, USA; Department of Genetics, University of North Carolina, Chapel Hill, USA.
M TaniokaOkayama University, Graduate School of Medicine Dentistry and Pharmaceutical Sciences, Medical AI Project, Okayama, Japan.
S G AhnDepartment of Surgery, Gangnam Severance Hospital, Yonsei University College of Medicine, Seoul, South Korea.
P ZagamiLineberger Comprehensive Center, University of North Carolina, Chapel Hill, USA; University of Milan, Milan, Italy.
T PascualDepartment of Medical Oncology, Hospital Clínic de Barcelona, Barcelona, Spain; Translational Genomics and Targeted Therapeutics in Solid Tumors, August Pi i Sunyer Biomedical Research Institute (IDIBAPS), Barcelona, Spain; SOLTI Breast Cancer Cooperative Group, Barcelona, Spain; Department of Medicine, University of Barcelona, Barcelona, Spain.
M ReditiBreast Cancer Translational Research Laboratory, Institut Jules Bordet, Hôpital Universitaire de Bruxelles (H.U.B), Université Libre de Bruxelles (ULB), Brussels, Belgium.
G TangNational Surgical Adjuvant Breast and Bowel Project (NSABP), Pittsburgh, USA; Department of Biostatistics, School of Public Health, University of Pittsburgh, Pittsburgh, USA.
K A HoadleyLineberger Comprehensive Center, University of North Carolina, Chapel Hill, USA; Department of Genetics, University of North Carolina, Chapel Hill, USA.
D VenetBreast Cancer Translational Research Laboratory, Institut Jules Bordet, Hôpital Universitaire de Bruxelles (H.U.B), Université Libre de Bruxelles (ULB), Brussels, Belgium.
N U RashidLineberger Comprehensive Center, University of North Carolina, Chapel Hill, USA; Department of Biostatistics, University of North Carolina, Chapel Hill, USA.
P A SpearsLineberger Comprehensive Center, University of North Carolina, Chapel Hill, USA.
S Di CosimoIntegrated Biology Platform, Fondazione IRCCS Istituto Nazionale dei Tumori, Milan, Italy.
E de AzambujaUniversité Libre de Bruxelles (ULB), Hôpital Universitaire de Bruxelles (H.U.B.), Institut Jules Bordet, Service d'Oncologie Médicale, Brussels, Belgium.
A ChoudhuryFTE of Novartis Healthcare Pvt. Ltd., Hyderabad, India.
P RastogiNational Surgical Adjuvant Breast and Bowel Project (NSABP), Pittsburgh, USA; UPMC Hillman Cancer Center, Pittsburgh, USA.
M N IslamGenomics and Epigenomics Shared Resource (GESR), Georgetown University Medical Center, Washington, USA.
J CortesOncology Department, International Breast Cancer Center (IBCC), Pangaea Oncology, Quironsalud Group, Barcelona, Spain; IOB Madrid, Institute of Oncology, Hospital Beata Maria Ana, Madrid, Spain; Medica Scientia Innovation Research (MEDSIR), Barcelona, Spain; Department of Medicine, Universidad Europea de Madrid, Faculty of Biomedical and Health Sciences, Madrid, Spain.
A Llombart-CussacMedical Oncology Department, Hospital Arnau de Vilanova, Valencia, Spain.
S M SwainNational Surgical Adjuvant Breast and Bowel Project (NSABP), Pittsburgh, USA; Lombardi Comprehensive Cancer Center, Georgetown University Medical Center and MedStar Health, Washington, USA.
C SotiriouBreast Cancer Translational Research Laboratory, Institut Jules Bordet, Hôpital Universitaire de Bruxelles (H.U.B), Université Libre de Bruxelles (ULB), Brussels, Belgium.
A PratDepartment of Medical Oncology, Hospital Clínic de Barcelona, Barcelona, Spain; Translational Genomics and Targeted Therapeutics in Solid Tumors, August Pi i Sunyer Biomedical Research Institute (IDIBAPS), Barcelona, Spain.
C M PerouLineberger Comprehensive Center, University of North Carolina, Chapel Hill, USA; Department of Genetics, University of North Carolina, Chapel Hill, USA.
L A CareyLineberger Comprehensive Center, University of North Carolina, Chapel Hill, USA; Division of Hematology-Oncology, Department of Medicine, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, USA. Electronic address: lisa_carey@med.unc.edu.

Funding

Member Site CoreU10CA180821 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI Evanthia Galanis, Olwen Hahn · 2014 to 2026
$177.3M
SWOG Network Group Operations Center of the NCTNU10CA180888 · NCI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI PRIMO N. LARA · 2014 to 2026
$152.1M
Statistics CoreU10CA180882 · NCI · MAYO CLINIC ROCHESTER · PI Sumithra Jay Mandrekar · 2014 to 2026
$115.0M
Tissue Culture Shared ResourceP30CA051008 · NCI · GEORGETOWN UNIVERSITY · PI MARCUS S NOEL · 1990 to 2026
$71.5M
Tissue Procurement & PathologyP50CA058223 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BENJAMIN CARLISLE CALHOUN · 1992 to 2026
$59.3M
THE ALLIANCE NCTN BIOREPOSITORY AND BIOSPECIMEN RESOURCEU24CA196171 · NCI · WASHINGTON UNIVERSITY · PI Mine Cicek, Wendy Frankel · 2015 to 2026
$35.0M
UT MD Anderson Cancer Center Network Lead Academic Participating Site (LAP) UG1UG1CA233329 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI KELLY K HUNT, CHELSEA Camille PINNIX · 2019 to 2026
$11.1M
Network Lead Academic Participating Site: Memorial Sloan Kettering Cancer CenterUG1CA233290 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI CAROL AGHAJANIAN, Darren Feldman · 2019 to 2026
$10.2M
NCTN Lead Academic Participating Site at Dana-Farber/Partners Cancer CareUG1CA233180 · NCI · DANA-FARBER CANCER INST · PI Harold John Burstein · 2019 to 2026
$8.6M
NCI NCTN-Network Lead Academic Participating Site at UPMC Hillman Cancer CenterUG1CA233184 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ADAM M BRUFSKY, John Munn Kirkwood · 2019 to 2026
$7.7M
UM LAPs -UG1 GrantUG1CA233160 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ANNE F SCHOTT · 2019 to 2026
$5.4M
UNITS: The UNC / UT National Clinical Trials Network Group Integrated Translational Science Production and Consultation CenterUG1CA233333 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HAYES, DAVID N, MERKER, JASON DEREK · 2019 to 2025
$4.8M
NCI NIH HHS P30 CA051008NCI NIH HHS P50 CA058223NCI NIH HHS R01 CA229409NCI NIH HHS U10 CA180821NCI NIH HHS U10 CA180882NCI NIH HHS U10 CA180888NCI NIH HHS U24 CA196171NCI NIH HHS UG1 CA233160NCI NIH HHS UG1 CA233180NCI NIH HHS UG1 CA233184NCI NIH HHS UG1 CA233290NCI NIH HHS UG1 CA233329NCI NIH HHS UG1 CA233333NCI NIH HHS UG1 CA233373
6 · The paper itself

Abstract

backgroundIn human epidermal growth factor receptor 2 (HER2)-positive early breast cancer (EBC), we investigated tumor and immune changes during neoadjuvant treatment and their impact on residual disease (RD) biology and prognostic implications across four neoadjuvant studies of trastuzumab with or without lapatinib, and with or without chemotherapy: CALGB 40601, PAMELA, NeoALTTO, and NSABP B-41. PATIENTS AND

methodsWe compared tumor and immune gene expression changes during neoadjuvant treatment and their association with event-free survival (EFS) by uni- and multivariable Cox regression models in different cohorts and timepoints: 452 RD samples at baseline including 169 with a paired RD, and biomarker changes during neoadjuvant therapy, evaluating model performance via the c-index.

resultsAnalysis of 169 paired tumor samples revealed a shift in intrinsic subtype proportions from HER2-enriched at baseline (50.3%) to normal-like (49.1%) followed by luminal A (18.9%) in RD. This luminal phenotypic change was supported by decreased correlation to the HER2-enriched centroid, ERBB2, and HER2 amplicon genes and increased correlation to the luminal A centroid (Wilcoxon test P < 0.001). Additionally, RD showed relative immune activation marked by significant increases in B-cell, CD8 T-cell, and natural killer cell signatures (Wilcoxon test P < 0.05). In multivariable Cox models, intrinsic subtypes at baseline provided more prognostic information, while immune gene expression signatures provided more prognostic information in RD. Notably, the best multivariable EFS model (c-index = 0.77) integrated the immunoglobulin G signature from RD samples (adjusted hazard ratio 0.45, 95% confidence interval 0.30-0.67, adjusted P = 0.002).

conclusionsIn patients with HER2-positive EBC and RD, tumor biomarkers provide more prognostic information at baseline. In contrast, immune biomarkers perform better for EFS prognosis in RD.

Indexed as

Antineoplastic Combined Chemotherapy ProtocolsBiomarkers, TumorBreast NeoplasmsErb-b2 Receptor Tyrosine KinasesNeoplasm, ResidualAdultFemaleGene Expression Regulation, NeoplasticHumansLapatinibMiddle AgedNeoadjuvant TherapyPrognosisTrastuzumabBiomarkers, TumorERBB2 protein, humanErb-b2 Receptor Tyrosine KinasesLapatinibTrastuzumabgene expressiongenomic biomarkersHER2-positive early breast cancerpost-treatmentprognosticresidual disease

Identifiers

PMID39706338
PMCPMC11949722

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.