Evidence map›Paper›PMID 39704719›Full record

ArticleActa crystallographica. Section F, Structural biology communications2025

Co-crystal structure of Helicobacter pylori biotin protein ligase with biotinyl-5-ATP.

Jesuferanmi P Ayanlade, Dylan E Davis, Sandhya Subramanian, David M Dranow, Donald D Lorimer, Brad Hammerson, Peter J Myler, Oluwatoyin A Asojo

Abstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Metabolic reprogramming inFrontiers in cellular and infection microbiology · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jesuferanmi P AyanladeDartmouth Cancer Center, One Medical Center Drive, Lebanon, NH 03756, USA.ORCID 0009-0009-7554-5084
Dylan E DavisDartmouth Cancer Center, One Medical Center Drive, Lebanon, NH 03756, USA.ORCID 0009-0001-2728-6972
Sandhya SubramanianCenter for Global Infectious Disease Research, Seattle Children's Research Institute, 307 Westlake Avenue North, Suite 500, Seattle, WA 98109, USA.
David M DranowSeattle Structural Genomics Center for Infectious Diseases, Seattle, Washington, USA.ORCID 0000-0003-1871-2455
Donald D LorimerSeattle Structural Genomics Center for Infectious Diseases, Seattle, Washington, USA.ORCID 0000-0002-9638-8083
Brad HammersonCenter for Global Infectious Disease Research, Seattle Children's Research Institute, 307 Westlake Avenue North, Suite 500, Seattle, WA 98109, USA.
Peter J MylerCenter for Global Infectious Disease Research, Seattle Children's Research Institute, 307 Westlake Avenue North, Suite 500, Seattle, WA 98109, USA.ORCID 0000-0002-0056-0513
Oluwatoyin A AsojoDartmouth Cancer Center, One Medical Center Drive, Lebanon, NH 03756, USA.ORCID 0000-0002-4043-2700

Funding

Centers for Research on Structural Biology of Infectious Diseases: Universal Influenza Vaccine Research75N93022C00036 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI STAKER, BART · 2022 to 2025
$21.7M
Program for Oncology Workforce Education and Research Experience at DartmouthR25CA250956 · NCI · DARTMOUTH COLLEGE · PI FIERING, STEVEN · 2020 to 2024
$841k
NCI NIH HHS R25 CA250956NCI NIH HHS R25CA250956NIAID NIH HHS 75N93022C00036
6 · The paper itself

Abstract

Helicobacter pylori, a type 1 carcinogen that causes human gastric ulcers and cancer, is a priority target of the Seattle Structural Genomics Center for Infectious Disease (SSGCID). These efforts include determining the structures of potential H. pylori therapeutic targets. Here, the purification, crystallization and X-ray structure of one such target, H. pylori biotin protein ligase (HpBPL), are reported. HpBPL catalyzes the activation of various biotin-dependent metabolic pathways, including fatty-acid synthesis, gluconeogenesis and amino-acid catabolism, and may facilitate the survival of H. pylori in the high-pH gastric mucosa. HpBPL is a prototypical bacterial biotin protein ligase, despite having less than 35% sequence identity to any reported structure in the Protein Data Bank. A biotinyl-5-ATP molecule sits in a well conserved cavity. HpBPL shares extensive tertiary-structural similarity with Mycobacterium tuberculosis biotin protein ligase (MtBPL), despite having less than 22% sequence identity. The active site of HpBPL is very similar to that of MtBPL and has the necessary residues to bind inhibitors developed for MtBPL.

Indexed as

Bacterial ProteinsBiotinCarbon-Nitrogen LigasesHelicobacter pyloriAdenosine TriphosphateAmino Acid SequenceCatalytic DomainCrystallography, X-RayModels, MolecularProtein BindingSulfurtransferasesAdenosine TriphosphateBacterial ProteinsBiotinbiotin synthetaseCarbon-Nitrogen LigasesSulfurtransferasescancergastric ulcersinfectious diseasesSSGCIDundergraduate education and training

Identifiers

PMID39704719
PMCPMC11701928

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.