Evidence map›Paper›PMID 39704517›Full record

ArticleMicrobiology resource announcements2025

Virome assembly reveals draft genomes of native Pseudomonas phages isolated from a paediatric bronchoalveolar lavage sample.

Patricia Agudelo-Romero, Jose A Caparros-Martin, Abhinav Sharma, Montserrat Saladié, Peter D Sly, Stephen M Stick, Fergal O'Gara, COMBAT study group

Abstract read
In one paragraph

Article in Microbiology resource announcements, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. From commensalism to pathogenesis: the hidden role of the respiratory virome.Frontiers in cellular and infection microbiology · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Patricia Agudelo-Romero *Wal-Yan Respiratory Research Centre, Telethon Kids Institute, Perth, Western Australia, Australia.
Jose A Caparros-Martin *Wal-Yan Respiratory Research Centre, Telethon Kids Institute, Perth, Western Australia, Australia.ORCID 0000-0003-1214-4952
Abhinav SharmaDSI-NRF Centre of Excellence for Biomedical Tuberculosis Research, SAMRC Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa.
Montserrat SaladiéCurtin Health Innovation Research Institute (CHIRI), Curtin University, Perth, Western Australia, Australia.
Peter D SlyChildren's Health and Environment Program, Child Health Research Centre, The University of Queensland, Brisbane, Australia.
Stephen M StickDepartment of Respiratory and Sleep Medicine, Perth Children's Hospital, Perth, Western Australia, Australia.ORCID 0000-0002-5386-8482
Fergal O'GaraWal-Yan Respiratory Research Centre, Telethon Kids Institute, Perth, Western Australia, Australia.ORCID 0000-0002-2659-0673
COMBAT study group

Funding

Cystic Fibrosis Foundation (CFF) OGARA1710Cystic Fibrosis Foundation (CFF) STICK10K0Cystic Fibrosis Foundation (CFF) STICK19K0DHAC | National Health and Medical Research Council (NHMRC) APP1183640DHAC | National Health and Medical Research Council (NHMRC) NHMRC115648Enterprise Ireland Commercialisation Fund CF-2017-0757-PEuropean Commission (EC) EU-634486Google for Education Google Cloud Education Program grantHealth Research Board (HRB) HRB-ILP-POR-2019-004Irish Thoracic Society (ITS) MRCG-2014-6Irish Thoracic Society (ITS) MRCG-2018-16Science Foundation Ireland (SFI) 13/TIDA/B2625Science Foundation Ireland (SFI) 14/TIDA/2438Science Foundation Ireland (SFI) 15/TIDA/2977Science Foundation Ireland (SFI) SSPC-2/PharM5Telethon Kids Institute Theme Collaboration Award 2023 Theme Collaboration Award 2023The Institute for Respiratory Health Glenn Brown Memorial Grant 2017
6 · The paper itself

Abstract

We present lung virome data recovered through shotgun metagenomics in bronchoalveolar lavage fluid from an infant with cystic fibrosis, who tested positive for

Indexed as

bronchoalveolar lavagecystic fibrosismetagenomicsviruses

Identifiers

PMID39704517
PMCPMC11812410

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.