Evidence map›Paper›PMID 39703896›Full record

Observational studyJournal of nutritional science2024

The vitamin D receptor TaqI TT genotype is associated with type 1 diabetes in the Black South African population.

Sureka Bhola, Eleanor M Cave, Katherine L Prigge, Sindeep Bhana, Nigel J Crowther, Carolyn J Padoa

Abstract readObservational Study
In one paragraph

Observational study in Journal of nutritional science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Sureka BholaDepartment of Chemical Pathology, National Health Laboratory Services (NHLS), Johannesburg, South Africa.
Eleanor M Cave *University of Witwatersrand, Johannesburg, South Africa.
Katherine L PriggeDepartment of Chemical Pathology, National Health Laboratory Services (NHLS), Johannesburg, South Africa.
Sindeep BhanaDepartment of Medicine, Chris Hani Baragwanath Hospital, Soweto, South Africa.
Nigel J CrowtherDepartment of Chemical Pathology, National Health Laboratory Services (NHLS), Johannesburg, South Africa.
Carolyn J Padoa *Department of Chemical Pathology, National Health Laboratory Services (NHLS), Johannesburg, South Africa.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Polymorphisms in the vitamin D receptor (VDR) gene (BsmI (rs1544410), FokI (rs2228570), ApaI (rs7975232), TaqI (rs731236)) and low vitamin D concentrations have previously been associated with type 1 diabetes (T1D). Vitamin D is thought to mediate the switch from a pro-inflammatory Th1 response to an anti-inflammatory Th2 response which is protective against the development of T1D. These associations are inconsistent across studies and population groups. These associations have not been investigated in the South African black population. Thus, this observational, case-control study aims to address this knowledge gap. South African black participants with T1D (cases; n = 182) and healthy controls (n = 151) were genotyped for the four VDR polymorphisms using polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP). Vitamin D levels were measured using high performance liquid chromatography (HPLC). Vitamin D levels were not significantly different between cases and controls (62.8 ± 20.7 vs. 59.5 ± 17.0 nmol/l, respectively; P = 0.122). Higher vitamin D levels were associated with the TaqI TT (P = 0.045) and FokI TT/TC (P = 0.014) genotypes in multivariate analyses. Furthermore, the TaqI TT genotype was associated with T1D status in multivariate analysis (P = 0.040). The FokI CC genotype increases the transcription of

Indexed as

Black PeopleDiabetes Mellitus, Type 1GenotypeReceptors, CalcitriolVitamin DAdolescentAdultCase-Control StudiesFemaleGenetic Predisposition to DiseaseHumansMaleMiddle AgedPolymorphism, Restriction Fragment LengthPolymorphism, Single NucleotideSouth AfricaReceptors, CalcitriolVDR protein, humanVitamin DHbA1c, Glycated haemoglobinPolymorphismsRXR, Retinoid X receptorSouth African populationT1D, Type 1 diabetesType 1 diabetesUTR, Untranslated regionVDR, Vitamin D receptorVitamin D receptor

Identifiers

PMID39703896
PMCPMC11658941

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.