Evidence map›Paper›PMID 39703431›Full record

ArticleNAR genomics and bioinformatics2024

PyNetCor: a high-performance Python package for large-scale correlation analysis.

Shibin Long, Yan Xia, Lifeng Liang, Ying Yang, Hailiang Xie, Xiaokai Wang

Abstract read
In one paragraph

Article in NAR genomics and bioinformatics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Shibin LongDepartment of Data Science, 01Life Institute, Shenzhen 518000, China.ORCID https://orcid.org/0009-0000-2992-3886
Yan XiaDepartment of Data Science, 01Life Institute, Shenzhen 518000, China.ORCID https://orcid.org/0000-0002-0765-6606
Lifeng LiangDepartment of Data Science, 01Life Institute, Shenzhen 518000, China.ORCID https://orcid.org/0000-0002-1904-1158
Ying YangDepartment of Data Science, 01Life Institute, Shenzhen 518000, China.
Hailiang XieDepartment of Data Science, 01Life Institute, Shenzhen 518000, China.
Xiaokai WangDepartment of Data Science, 01Life Institute, Shenzhen 518000, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The development of multi-omics technologies has generated an abundance of biological datasets, providing valuable resources for investigating potential relationships within complex biological systems. However, most correlation analysis tools face computational challenges when dealing with these high-dimensional datasets containing millions of features. Here, we introduce pyNetCor, a fast and scalable tool for constructing correlation networks on large-scale and high-dimensional data. PyNetCor features optimized algorithms for both full correlation coefficient matrix computation and top-k correlation search, outperforming other tools in the field in terms of runtime and memory consumption. It utilizes a linear interpolation strategy to rapidly estimate

Identifiers

PMID39703431
PMCPMC11655297

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.