Evidence map›Paper›PMID 39702930›Full record

ArticleJournal of the American Chemical Society2025

Late-Stage Reshaping of Phage-Displayed Libraries to Macrocyclic and Bicyclic Landscapes using a Multipurpose Linchpin.

Kejia Yan, Mark Miskolzie, Fernando Banales Mejia, Chuanhao Peng, Arunika I Ekanayake, Alexey Atrazhev, Jessica Cao, Dustin J Maly, Ratmir Derda

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Universal Baseline forbioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Fishing for covalent peptides.Nature chemical biology · 2025
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Kejia YanDepartment of Chemistry, University of Alberta, Edmonton, AB T6G 2G2, Canada.
Mark MiskolzieDepartment of Chemistry, University of Alberta, Edmonton, AB T6G 2G2, Canada.
Fernando Banales MejiaGraduate Program in Biological Physics, Structure and Design, University of Washington, Seattle, Washington 98195, United States.
Chuanhao PengDepartment of Chemistry, University of Alberta, Edmonton, AB T6G 2G2, Canada.
Arunika I EkanayakeDepartment of Chemistry, University of Alberta, Edmonton, AB T6G 2G2, Canada.
Alexey AtrazhevDepartment of Chemistry, University of Alberta, Edmonton, AB T6G 2G2, Canada.
Jessica Cao48Hour Discovery, Nanotechnology Research Centre, Edmonton, AB T6G 2M9, Canada.
Dustin J MalyDepartment of Chemistry, University of Washington, Seattle, Washington 98195, United States.ORCID 0000-0003-0094-0177
Ratmir DerdaDepartment of Chemistry, University of Alberta, Edmonton, AB T6G 2G2, Canada.ORCID 0000-0003-1365-6570

Funding

Chemical Genetic Analysis of RAS SignalingR01GM145011 · NIGMS · UNIVERSITY OF WASHINGTON · PI MALY, DUSTIN J · 2022 to 2025
$1.5M
Developing a Chemically-Controlled RAS ToolsetF31GM155953 · NIGMS · UNIVERSITY OF WASHINGTON · PI BANALES MEJIA, FERNANDO · 2024 to 2025
$90k
NIGMS NIH HHS F31 GM155953NIGMS NIH HHS R01 GM145011
6 · The paper itself

Abstract

Genetically encoded libraries (GEL) are increasingly being used for the discovery of ligands for "undruggable" targets that cannot be addressed with small molecules. Foundational GEL platforms like phage-, yeast-, ribosome-, and mRNA-display have enabled the display of libraries composed of 20 natural amino acids (20AA). Unnatural amino acids (UAA) and chemical post-translational modification (cPTM) expanded GEL beyond the 20AA space to yield unnatural linear, cyclic, and bicyclic peptides. The standard operating procedure incorporates UAA and cPTM into a "naive" library with 10

Indexed as

Peptide LibraryAmino AcidsLigandsMacrocyclic CompoundsPeptidesPeptides, CyclicAmino AcidsLigandsMacrocyclic CompoundsPeptide LibraryPeptidesPeptides, Cyclic

Identifiers

PMID39702930
PMCPMC11972611

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.