Evidence map›Paper›PMID 39702827›Full record

ArticleCommunications biology2024

Structural insights into the enzymatic breakdown of azomycin-derived antibiotics by 2-nitroimdazole hydrolase (NnhA).

F Hafna Ahmed, Jian-Wei Liu, Santana Royan, Andrew C Warden, Lygie Esquirol, Gunjan Pandey, Janet Newman, Colin Scott, Thomas S Peat

Abstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Disordered N-termini enhance the thermostability of SGNH-hydrolase family polyesterases.Protein science : a publication of the Protein Society · 2026
    Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

F Hafna AhmedEnvironment, CSIRO, Canberra, ACT, 2601, Australia. hafna.ahmed@csiro.au.ORCID 0000-0002-9153-2699
Jian-Wei LiuEnvironment, CSIRO, Canberra, ACT, 2601, Australia.
Santana RoyanManufacturing, CSIRO, 343 Royal Parade, Parkville, VIC, 3052, Australia.
Andrew C WardenEnvironment, CSIRO, Canberra, ACT, 2601, Australia.ORCID 0000-0003-2683-9798
Lygie EsquirolEnvironment, CSIRO, Canberra, ACT, 2601, Australia.ORCID 0000-0002-4887-3260
Gunjan PandeyEnvironment, CSIRO, Canberra, ACT, 2601, Australia.ORCID 0000-0002-3514-4624
Janet NewmanManufacturing, CSIRO, 343 Royal Parade, Parkville, VIC, 3052, Australia.
Colin ScottEnvironment, CSIRO, Canberra, ACT, 2601, Australia.ORCID 0000-0001-6110-6982
Thomas S PeatManufacturing, CSIRO, 343 Royal Parade, Parkville, VIC, 3052, Australia. t.peat@unsw.edu.au.ORCID 0000-0002-6488-0831

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The antibiotic 2-nitroimidazole (2NI) or azomycin, used for treating drug-resistant tuberculosis and imaging tumor hypoxia, requires activation by bacterial nitroreductases for its antibiotic and cytotoxic effect. Mycobacterium sp. JS330 produces 2-nitroimidazole nitrohydrolase (NnhA) that circumvents 2NI activation, conferring 2NI resistance by hydrolysing it to nitrite and imidazol-2-one (IM2O) instead. This study elucidates NnhA's structure, catalytic mechanism, and evolutionary background within the guanidino-group modifying enzyme (GME) superfamily, aided by a more soluble protein variant engineered through directed evolution. Despite low sequence similarity and limited occurrence in a few soil-dwelling mycobacteria and Actinomycetota, NnhA maintains the α/β propeller fold characteristic of GME superfamily enzymes and forms an unusual hexameric ring structure formed by a trimer of domain-swapped dimers. The similarity of its active site to arginine deiminases (ADIs) and human dimethylarginine dimethylaminohydrolases (DDAHs), along with molecular dynamics simulations, suggests NnhA's catalytic mechanism resembles the hydrolysis reactions of these related enzymes.

Indexed as

Anti-Bacterial AgentsHydrolasesBacterial ProteinsCatalytic DomainHumansMycobacteriumNitroimidazolesAnti-Bacterial AgentsBacterial ProteinsHydrolasesNitroimidazoles

Identifiers

PMID39702827
PMCPMC11659421

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.