Evidence map›Paper›PMID 39702679›Full record

ArticleFamilial cancer2024

Haplotype analysis detects MLH1 founder variant in Indian Lynch syndrome patient cohort.

Harsh Sheth, Jyoti Sadhwani, Abhinav Jain, S G Thenral, Vedam Ramprasad, D Timothy Bishop

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Article in Familial cancer, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Harsh ShethFRIGE Institute of Human Genetics, Ahmedabad, India. harsh.sheth@frige.co.in.ORCID 0000-0001-9626-0971
Jyoti SadhwaniFRIGE Institute of Human Genetics, Ahmedabad, India.ORCID 0009-0007-3121-0704
Abhinav JainGastro1 Hospital, Ahmedabad, India.ORCID 0000-0003-3123-8508
S G ThenralMedGenome Lab Pvt. Ltd., Bengaluru, India.ORCID 0000-0003-2092-502X
Vedam RamprasadMedGenome Lab Pvt. Ltd., Bengaluru, India.ORCID 0000-0002-0379-6054
D Timothy BishopLeeds Institute of Medical Research, University of Leeds, Leeds, UK.ORCID 0000-0002-8752-8785

Funding

Gujarat State Biotechnology Mission GSBTM/JDR&D/604/2019/299
6 · The paper itself

Abstract

Lynch syndrome (LS) is an autosomal dominant hereditary cancer predisposition syndrome whereby the lifetime risk of developing gastrointestinal and genitourinary cancers rises by to over 50%. It is caused by heterozygous variants in the DNA mismatch repair genes- MLH1, MSH2, MSH6 and PMS2, with the majority detected in MLH1 and MSH2. Recurrently observed LS-associated variants in apparently unrelated individuals have either arisen de novo in different families due to mutation hotspots or are inherited from a common ancestor (founder) that lived several generations back. Testing for founder variants can facilitate molecular diagnosis of LS more efficiently and cost effectively than screening for all possible variants in the MMR genes. Here, we report a study of the missense variant c.306G > T in the MLH1 gene, the first potential founder variant identified in LS patients of Indian ethnicity. Haplotype analysis consisting of 25 LS carriers with the MLH1 c.306G > T variant and 100 healthy controls confirmed a shared haplotype in cases spanning a 27.8 kb region encompassing the c.306G > T variant (𝝌

Indexed as

Colorectal Neoplasms, Hereditary NonpolyposisFounder EffectHaplotypesMutL Protein Homolog 1Adaptor Proteins, Signal TransducingAdultCase-Control StudiesFemaleGenetic Predisposition to DiseaseHumansIndiaMaleMiddle AgedMutation, MissensePedigreeAdaptor Proteins, Signal TransducingMLH1 protein, humanMutL Protein Homolog 1Founder variantHaplotypeIndian populationLynch syndromeMLH1

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.