Evidence map›Paper›PMID 39702669›Full record

ArticleCommunications chemistry2024

Functional biosynthetic stereodivergence in a gene cluster via a dihydrosydnone N-oxide.

Jiajun Ren, Anugraha Mathew, María Rodríguez-García, Tobias Kohler, Olivier Blacque, Anthony Linden, Leo Eberl, Simon Sieber, Karl Gademann

Abstract read
In one paragraph

Article in Communications chemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. ACS chemical biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jiajun RenDepartment of Chemistry, University of Zurich, Zurich, Switzerland.
Anugraha MathewDepartment of Plant and Microbial Biology, University of Zurich, Zurich, Switzerland.
María Rodríguez-GarcíaDepartment of Plant and Microbial Biology, University of Zurich, Zurich, Switzerland.
Tobias KohlerDepartment of Chemistry, University of Zurich, Zurich, Switzerland.
Olivier BlacqueDepartment of Chemistry, University of Zurich, Zurich, Switzerland.
Anthony LindenDepartment of Chemistry, University of Zurich, Zurich, Switzerland.
Leo EberlDepartment of Plant and Microbial Biology, University of Zurich, Zurich, Switzerland. leberl@botinst.uzh.ch.ORCID http://orcid.org/0000-0002-7241-0864
Simon SieberDepartment of Chemistry, University of Zurich, Zurich, Switzerland. simon.sieber@uzh.ch.ORCID http://orcid.org/0000-0003-1763-2525
Karl GademannDepartment of Chemistry, University of Zurich, Zurich, Switzerland. karl.gademann@uzh.ch.ORCID http://orcid.org/0000-0003-3053-0689

Funding

Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (Swiss National Science Foundation) 186410
6 · The paper itself

Abstract

Chirality plays a critical role in the biochemistry of life and often only one enantiomeric series is observed (homochirality). Only a few natural products have been obtained as racemates, e.g. the signalling molecule valdiazen produced by Burkholderia cenocepacia H111. In this study, we investigated the ham biosynthetic gene cluster and discovered that both the enantiomerically pure (R)-fragin and the racemic valdiazen result from the same pathway. This stereodivergence is based on the unusual heterocyclic intermediate dihydrosydnone N-oxide, as evident from gene knockout, stable isotope feeding experiments, and mass spectrometry experiments. Both non-enzymatic racemisation via keto-enol tautomerisation and enzyme-mediated dynamic kinetic resolution were found to be crucial to this stereodivergent pathway. This novel mechanism underpins the production of configurationally and biologically distinct metabolites from a single gene cluster. Our findings highlight the intricate design of an intertwined biosynthetic pathway and provide a deeper understanding of microbial secondary metabolism related to microbial communication.

Identifiers

PMID39702669
PMCPMC11659414

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.