Evidence map›Paper›PMID 39702664›Full record

ArticleCommunications chemistry2024

Discovering covalent cyclic peptide inhibitors of peptidyl arginine deiminase 4 (PADI4) using mRNA-display with a genetically encoded electrophilic warhead.

Isabel R Mathiesen, Ewen D D Calder, Simone Kunzelmann, Louise J Walport

Abstract read
In one paragraph

Article in Communications chemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Covalent chemical probes.Communications chemistry · 2025
    Article
  5. Article
  6. Review
  7. An mRNA Display Approach for Covalent Targeting of aJournal of the American Chemical Society · 2025
    Article
  8. Article
  9. An mRNA Display Approach for Covalent Targeting of abioRxiv : the preprint server for biology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Isabel R MathiesenProtein-Protein Interaction Laboratory, The Francis Crick Institute, London, UK.ORCID http://orcid.org/0000-0003-1854-405X
Ewen D D CalderProtein-Protein Interaction Laboratory, The Francis Crick Institute, London, UK.ORCID http://orcid.org/0000-0001-7201-8451
Simone KunzelmannStructural Biology Scientific Technology Platform, The Francis Crick Institute, London, UK.ORCID http://orcid.org/0000-0002-2678-0549
Louise J WalportProtein-Protein Interaction Laboratory, The Francis Crick Institute, London, UK. l.walport@imperial.ac.uk.ORCID http://orcid.org/0000-0002-3795-8365

Funding

RCUK | Engineering and Physical Sciences Research Council (EPSRC) EP/X020878/1Wellcome Trust CC2030
6 · The paper itself

Abstract

Covalent drugs can achieve high potency with long dosing intervals. However, concerns remain about side-effects associated with off-target reactivity. Combining macrocyclic peptides with covalent warheads provides a solution to minimise off-target reactivity: the peptide enables highly specific target binding, positioning a weakly reactive warhead proximal to a suitable residue in the target. Here we demonstrate the direct discovery of covalent cyclic peptides using encoded libraries containing a weakly electrophilic cysteine-reactive fluoroamidine warhead. We combine direct incorporation of the warhead into peptide libraries using the flexible in vitro translation system with a peptide selection approach that identifies only covalent target binders. Using this approach, we identify potent and selective covalent inhibitors of the peptidyl arginine deiminase, PADI4 or PAD4, that react exclusively at the active site cysteine. We envisage this approach will enable covalent peptide inhibitor discovery for a range of related enzymes and expansion to alternative warheads in the future.

Identifiers

PMID39702664
PMCPMC11659602

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.