Evidence map›Paper›PMID 39701979›Full record

ArticleBMC plant biology2024

Single-cell transcriptomic and cell‑type‑specific regulatory networks in Polima temperature-sensitive cytoplasmic male sterility of Brassica napus L.

Shipeng Li, Jing Zhang, Caiwu Chen, Ahmad Ali, Jing Wen, Cheng Dai, Chaozhi Ma, Jinxing Tu, Jinxiong Shen, Tingdong Fu and 1 more

Abstract read
In one paragraph

Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Opportunities and challenges in the application of single-cell transcriptomics in plant tissue research.Physiology and molecular biology of plants : an international journal of functional plant biology · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Shipeng LiNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, National Engineering Research Center of Rapeseed, Huazhong Agricultural University, Wuhan, 430070, China.
Jing ZhangNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, National Engineering Research Center of Rapeseed, Huazhong Agricultural University, Wuhan, 430070, China.
Caiwu ChenNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, National Engineering Research Center of Rapeseed, Huazhong Agricultural University, Wuhan, 430070, China.
Ahmad AliNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, National Engineering Research Center of Rapeseed, Huazhong Agricultural University, Wuhan, 430070, China.
Jing WenNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, National Engineering Research Center of Rapeseed, Huazhong Agricultural University, Wuhan, 430070, China.
Cheng DaiNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, National Engineering Research Center of Rapeseed, Huazhong Agricultural University, Wuhan, 430070, China.
Chaozhi MaNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, National Engineering Research Center of Rapeseed, Huazhong Agricultural University, Wuhan, 430070, China.
Jinxing TuNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, National Engineering Research Center of Rapeseed, Huazhong Agricultural University, Wuhan, 430070, China.
Jinxiong ShenNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, National Engineering Research Center of Rapeseed, Huazhong Agricultural University, Wuhan, 430070, China.
Tingdong FuNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, National Engineering Research Center of Rapeseed, Huazhong Agricultural University, Wuhan, 430070, China.
Bin YiNational Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, National Engineering Research Center of Rapeseed, Huazhong Agricultural University, Wuhan, 430070, China. yibin@mail.hzau.edu.cn.

Funding

National Key Research and Development Program of China 2021YFD1600500National Natural Science Foundation of China 32201883Wuhan Science and Technology Major Project on Key techniques of biological breeding and Breeding of new varieties 2022021302024851
6 · The paper itself

Abstract

backgroundThermosensitive male sterility (TMS) is a heritable agronomic trait influenced by the interaction between genotype and environment. The anthers of plants are composed of various specialized cells, each of which plays different roles in plant reproduction. In rapeseed (Brassica napus L.), Polima (pol) temperature-sensitive cytoplasmic male sterility (TCMS) is widely used in two-line breeding because its fertility can be partially restored at certain temperatures. The pol-TCMS line exhibits abnormal anther development and pollen abortion at high (restrictive) temperatures (HT, 25 °C) compared to at low (permissive) temperatures (LT, 16 °C). However, the response of different anther cell types to HT and the dynamic regulation of genes under such conditions remain largely unknown.

resultsWe present the first single-cell transcriptomic atlas of Brassica napus early developing flower bud tissues in response to HT. We identified 8 cell types and 17 transcriptionally distinct cell clusters via known marker genes under LT and HT treatment conditions. Under HT conditions, changes in the gene expression patterns of different cell clusters were observed, with the number of down-regulated genes in various cell types exceeding that of up-regulated genes. Pseudotime trajectory analysis revealed that HT strongly affected the development of early stamen/anther tissue cells. In combination with the snRNA-seq, WGCNA, and bulk RNA-seq results, we found that many transcription factors play crucial roles in the response to HT, especially heat response family genes.

conclusionsOur study revealed the transcriptional regulatory network of floral bud tissue in the pol-TCMS line under HT/LT conditions and increased our understanding of high-temperature-induced anther developmental abnormalities, which may help researchers utilize TCMS in the two-line breeding of Brassica plants.

Indexed as

Brassica napusFlowersPlant InfertilityTranscriptomeGene Expression ProfilingGene Expression Regulation, PlantGene Regulatory NetworksPollenSingle-Cell AnalysisTemperatureAntherBrassica napusFlower budPol TCMSSnRNA-seqStamen

Identifiers

PMID39701979
PMCPMC11656827

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.