Evidence map›Paper›PMID 39701969›Full record

ArticleBMC plant biology2024

Definition and regulatory analysis of the SUMOylation system in Caixin (Brassica rapa var. Parachinensis) during pectobacterium carotovorum infection.

Shikang Lei, Guangguang Li, Ding Jiang, Fanchong Yuan, Yansong Zheng, Bihao Cao, Hua Zhang

Abstract read
In one paragraph

Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

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0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

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3 · Its place in the literature

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1 citing paper in PubMed.

  1. Review
4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Shikang LeiGuangzhou Academy of Agricultural Sciences, Guangzhou, 510335, China.
Guangguang LiGuangzhou Academy of Agricultural and Rural Sciences, Guangzhou, 510335, China.
Ding JiangGuangzhou Academy of Agricultural Sciences, Guangzhou, 510335, China.
Fanchong YuanGuangzhou Academy of Agricultural Sciences, Guangzhou, 510335, China.
Yansong ZhengGuangzhou Academy of Agricultural and Rural Sciences, Guangzhou, 510335, China.
Bihao CaoCollege of Horticulture, South China Agricultural University, Guangzhou, 510642, China.
Hua ZhangGuangzhou Academy of Agricultural Sciences, Guangzhou, 510335, China. zhanghuagz@yeah.net.

Funding

Guangzhou Agricultural Support Fund Project Suinonghan [2024] No. 183Guangzhou Scientific and Technological Projects 202206010173Guangzhou Scientific and Technological Projects 2023B03J1270Key-Area Research and Development Program of Guangdong Province 2022B0202080001Open Fund of Key laboratory of Biology and Germplasm Enhancement of Horticultural Crops in South China, Ministry of Agriculture and Rural Areas NYBK2023002Seed Industry Revitalization Project of the Provincial Rural Revitalization Strategy Special Fund 2022-NJS-03-001
6 · The paper itself

Abstract

backgroundThe modification of protein substrates by small ubiquitin-related modifier (SUMO) plays a vital role in plants subjected to biotic and abiotic stresses. However, its role in the stress responses of Brassica plants remains poorly understood.

resultsA genome-wide analysis revealed the presence of 30 SUMOylation genes in the Caixin genome. These results demonstrated that the Caixin genome contains all the necessary components for SUMOylation. Analysis of the cis-acting elements revealed that the promoters of SUMOylation genes presented diverse combinations of developmental and stress-related cis-regulatory elements. The RNA-seq data indicated that 23 SUMOylation genes presented relatively high expression levels under normal conditions and exhibited a notable decrease in expression following Pectobacterium carotovorum subsp. carotovorum (Pcc) infection. Additionally, dynamic alterations in SUMO conjugates were observed in response to Pcc infection.

conclusionsThe Caixin genome contains genes involved in SUMOylation. The majority of these genes presented multiple copies, and analyses of their transcription and protein profiles indicate that they may play a role in the response to Pcc infection.

Indexed as

Pectobacterium carotovorumPlant DiseasesSumoylationBrassica rapaGene Expression Regulation, PlantGenome, PlantPlant ProteinsPlant ProteinsBiotic stressCaixin (Brassica rapa var. parachinensis)Soft rotSUMOylation

Identifiers

PMID39701969
PMCPMC11657214

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