Evidence map›Paper›PMID 39701966›Full record

ArticleBMC genomics2024

Unraveling the ancient fungal DNA from the Iceman gut.

Nikolay Oskolkov, Anna Sandionigi, Anders Götherström, Fabiana Canini, Benedetta Turchetti, Laura Zucconi, Tanja Mimmo, Pietro Buzzini, Luigimaria Borruso

Abstract read
In one paragraph

Article in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Nikolay Oskolkov *Department of Biology, Science for Life Laboratory, National Bioinformatics Infrastructure Sweden, Lund University, Lund, Sweden. nikolay.oskolkov@scilifelab.se.
Anna Sandionigi *Department of Informatics, Systems and Communication, University of Milan-Bicocca, Milan, Italy.
Anders GötherströmCentre for Palaeogenetics, Department of Archaeology and Classical Studies, Stockholm University, Stockholm, Sweden.
Fabiana CaniniDepartment of Ecological and Biological Sciences, University of Tuscia, 01100, Viterbo, Italy.
Benedetta TurchettiDepartment of Agricultural, Food and Environmental Sciences, University of Perugia, Perugia, Italy.
Laura ZucconiDepartment of Ecological and Biological Sciences, University of Tuscia, 01100, Viterbo, Italy.
Tanja MimmoFaculty of Agricultural, Environmental and Food Sciences, Free University of Bozen-Bolzano, Piazza Università 5, Bolzano, Italy.
Pietro BuzziniDepartment of Agricultural, Food and Environmental Sciences, University of Perugia, Perugia, Italy.
Luigimaria BorrusoFaculty of Agricultural, Environmental and Food Sciences, Free University of Bozen-Bolzano, Piazza Università 5, Bolzano, Italy. luigimaria.borruso@unibz.it.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundFungal DNA is rarely reported in metagenomic studies of ancient samples. Although fungi are essential for their interactions with all kingdoms of life, limited information is available about ancient fungi. Here, we explore the possibility of the presence of ancient fungal species in the gut of Ötzi, the Iceman, a naturally mummified human found in the Tyrolean Alps (border between Italy and Austria).

methodsA robust bioinformatic pipeline has been developed to detect and authenticate fungal ancient DNA (aDNA) from muscle, stomach, small intestine, and large intestine samples.

resultsWe revealed the presence of ancient DNA associated with Pseudogymnoascus genus, with P. destructans and P. verrucosus as possible species, which were abundant in the stomach and small intestine and absent in the large intestine and muscle samples.

conclusionWe suggest that Ötzi may have consumed these fungi accidentally, likely in association with other elements of his diet, and they persisted in his gut after his death due to their adaptability to harsh and cold environments. This suggests the potential co-occurrence of ancient humans with opportunistic fungal species and proposes and validates a conservative bioinformatic approach for detecting and authenticating fungal aDNA in historical metagenomic samples.

Indexed as

DNA, AncientDNA, FungalComputational BiologyFungiGastrointestinal MicrobiomeGastrointestinal TractHumansMetagenomicsMummiesDNA, AncientDNA, FungalAncient DNA (aDNA)Ancient metagenomicsFungiIcemanPseudogymnoascus

Identifiers

PMID39701966
PMCPMC11660557

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.