Evidence map›Paper›PMID 39699245›Full record

Trial reportAntimicrobial agents and chemotherapy2025

SARS-CoV-2 resistance analyses from the Phase 3 PINETREE study of remdesivir treatment in nonhospitalized participants.

Lauren Rodriguez, Hery W Lee, Jiani Li, Ross Martin, Dong Han, Simin Xu, Jasmine Moshiri, Nadine Peinovich, Gregory Camus, Jason K Perry and 5 more

Abstract readClinical Trial, Phase IIIRandomized Controlled Trial
In one paragraph

Trial report in Antimicrobial agents and chemotherapy, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Trial
  2. Oral lipid prodrug V2043 (1-Antimicrobial agents and chemotherapy · 2026
    Article
  3. Potency ofThe Kobe journal of medical sciences · 2026
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Lauren RodriguezGilead Sciences, Inc., Foster City, California, USA.ORCID 0009-0009-9124-4652
Hery W LeeDepartment of Medical Microbiology and Immunology, University of Alberta, Edmonton, Alberta, Canada.
Jiani LiGilead Sciences, Inc., Foster City, California, USA.
Ross MartinGilead Sciences, Inc., Foster City, California, USA.
Dong HanGilead Sciences, Inc., Foster City, California, USA.
Simin XuGilead Sciences, Inc., Foster City, California, USA.
Jasmine MoshiriGilead Sciences, Inc., Foster City, California, USA.
Nadine PeinovichGilead Sciences, Inc., Foster City, California, USA.
Gregory CamusGilead Sciences, Inc., Foster City, California, USA.
Jason K PerryGilead Sciences, Inc., Foster City, California, USA.
Robert H HylandGilead Sciences, Inc., Foster City, California, USA.
Danielle P PorterGilead Sciences, Inc., Foster City, California, USA.
Mazin AbdelghanyGilead Sciences, Inc., Foster City, California, USA.
Matthias GötteDepartment of Medical Microbiology and Immunology, University of Alberta, Edmonton, Alberta, Canada.
Charlotte HedskogGilead Sciences, Inc., Foster City, California, USA.

Funding

Gilead Sciences (Gilead)
6 · The paper itself

Abstract

Remdesivir inhibits the SARS-CoV-2 RNA-dependent RNA polymerase (RdRp; Nsp12). Here, we conducted viral resistance analyses from the Phase 3 PINETREE trial of remdesivir in nonhospitalized participants at risk of severe COVID-19. Nasopharyngeal swabs (collected at baseline [Day 1], Days 2, 3, 7, and 14) were eligible for analysis if their viral load was above the lower limit of quantification for the RT-qPCR assay (2228 copies/mL). The SARS-CoV-2 genome was sequenced for all remdesivir participants and 50% of placebo participants (baseline, Days 3, 7, and 14) and for participants who progressed to COVID-19-related hospitalization or all-cause death (all time points). Emergent substitutions in Nsp12 and other replication complex proteins were phenotyped using site-directed mutagenesis in a SARS-CoV-2 subgenomic replicon system. Overall, emergent Nsp12 substitutions were detected in 8/115 (7.0%) remdesivir participants and 7/129 (5.4%) placebo participants (1 substitution overlap between groups). Based on a structural analysis, none of the emergent Nsp12 substitutions were in direct contact with the incoming nucleoside triphosphate substrate, the RNA, or the RNA template 5' overhang. One substitution (A376V) showed reduced susceptibility to remdesivir (12.6-fold change in remdesivir half-maximal concentration [EC

Indexed as

Adenosine MonophosphateAlanineAntiviral AgentsDrug Resistance, ViralSARS-CoV-2AdultCoronavirus RNA-Dependent RNA PolymeraseCOVID-19COVID-19 Drug TreatmentFemaleHumansMaleMiddle AgedRNA-Dependent RNA PolymeraseViral LoadViral Nonstructural ProteinsAdenosine MonophosphateAlanineAntiviral AgentsCoronavirus RNA-Dependent RNA PolymeraseNSP12 protein, SARS-CoV-2remdesivirRNA-Dependent RNA PolymeraseViral Nonstructural Proteinsdrug therapy

Identifiers

PMID39699245
PMCPMC11823660

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.