Evidence map›Paper›PMID 39695304›Full record

ArticleScientific data2024

Chromosome-level genome assembly and annotation of the camouflage grouper (Epinephelus polyphekadion).

Haoyi Li, Yiqun Liu, Mingguang Mao, Yunxiang Mao

Abstract readDataset
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Haoyi Li *Key Laboratory of Tropical Aquatic Germplasm of Hainan Province, Sanya Oceanographic Institute, Ocean University of China, Sanya, 572000, China.
Yiqun Liu *Key Laboratory of Tropical Aquatic Germplasm of Hainan Province, Sanya Oceanographic Institute, Ocean University of China, Sanya, 572000, China.
Mingguang MaoYazhou Bay Innovation Institute, Hainan Tropical Ocean University, Sanya, 572022, China.
Yunxiang MaoYazhou Bay Innovation Institute, Hainan Tropical Ocean University, Sanya, 572022, China. yxmao@hntou.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The camouflage grouper (Epinephelus polyphekadion) is an economically carnivorous fish widely distributed in the Indo-Pacific. However, no valid reference genome of E. polyphekadion severely hinders further research on biology and genomic breeding programs. Here, we presented a high-quality chromosome-level genome assembly of E. polyphekadion using PacBio sequencing and Hi-C technologies. The chromosome-level genome has a total length of 1.1 Gb with a contig N50 of 40.8 Mb. Approximately 99.4% of the assembly lengths were anchored to 24 pseudochromosomes. In total, 25,165 protein-coding genes were predicted, among which 24,634 genes (97.9%) were functionally annotated. The completeness of the assembly was estimated to be 99.1% using BUSCO. In summary, the first reference genome of E. polyphekadion in this study will not only provide pivotal genetic resources for further biological and evolutionary studies of groupers, but also benefit the development of genomic hybridization breeding in the artificial grouper industry.

Indexed as

ChromosomesGenomeMolecular Sequence AnnotationAnimalsBass

Identifiers

PMID39695304
PMCPMC11655534

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.