ArticleScientific data2024
Genome assembly of a diversity panel of Chenopodium quinoa.
Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed.
- Chromosome-scale genomes and population resequencing resolve subgenome diversity and halophyte adaptation in Salicornia.Nature communications · 2026Article
- Genomic prediction in quinoa across contrasting environments using statistical and machine learning models.The plant genome · 2026Article
- Long Terminal Repeat Retrotransposons in Chenopodium quinoa Provide Insights Into Subgenome Differentiation and Altitudinal Adaptation.Plant, cell & environment · 2026Article
- Genome and transcriptome analyses reveal parallel altitude adaptation in Chenopodium.Genome biology · 2026Article
- Chromosome-level genome assembly of the AustralianFrontiers in plant science · 2026Article
- A gene-based pangenome reveals genomic divergence and altitudinal differentiation in allotetraploid quinoa.Frontiers in plant science · 2026Article
- Agromorphological Characterization of Quinoa (Plants (Basel, Switzerland) · 2025Article
- A pangenome reveals LTR repeat dynamics as a major driver of genome evolution in Chenopodium.The plant genome · 2025Article
- Genome assembly of a diversity panel of Chenopodium quinoa.Scientific data · 2024Article
- Root restriction accelerates genomic target identification in quinoa under controlled conditions.Physiologia plantarumArticle
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Authors and funding
18 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Quinoa (Chenopodium quinoa) is an important crop for the future challenges of food and nutrient security. Deep characterization of quinoa diversity is needed to support the agronomic improvement and adaptation of quinoa as its worldwide cultivation expands. In this study, we report the construction of chromosome-scale genome assemblies of eight quinoa accessions covering the range of phenotypic and genetic diversity of both lowland and highland quinoas. The assemblies were produced from a combination of PacBio HiFi reads and Bionano Saphyr optical maps, with total assembly sizes averaging 1.28 Gb with a mean N50 of 71.1 Mb. Between 43,733 and 48,564 gene models were predicted for the eight new quinoa genomes, and on average, 66% of each quinoa genome was classified as repetitive sequences. Alignment between the eight genome assemblies allowed the identification of structural rearrangements including inversions, translocations, and duplications. These eight novel quinoa genome assemblies provide a resource for association genetics, comparative genomics, and pan-genome analyses for the discovery of genetic components and variations underlying agriculturally important traits.
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