Evidence map›Paper›PMID 39695240›Full record

ArticleScientific data2024

A multi-omics database of buffaloes from Yangtze valley reveals diversity of water buffalo (Bubalus bubalis).

Yangyang Shen, Zhenjiang An, Shuwen Xia, Qiang Ding, Kunlin Chen, Yilong Miao, Tao Wang, Jifeng Zhong, Jianbin Li, Xiao Wang and 1 more

Abstract readDataset
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yangyang ShenInstitute of Animal Science, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, China.
Zhenjiang AnInstitute of Animal Science, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, China.
Shuwen XiaInstitute of Animal Science, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, China.
Qiang DingInstitute of Animal Science, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, China.
Kunlin ChenInstitute of Animal Science, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, China.
Yilong MiaoCollege of Animal Science and Technology, Nanjing Agricultural University, Nanjing, 210095, China.
Tao WangGuangdong GemPharmatech Co., Ltd., Foshan, 528000, China.
Jifeng ZhongInstitute of Animal Science, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, China.
Jianbin LiInstitute of Animal Science and Veterinary Medicine, Shandong Academy of Agricultural Sciences, Jinan, 250100, China.
Xiao WangInstitute of Animal Science and Veterinary Medicine, Shandong Academy of Agricultural Sciences, Jinan, 250100, China. xiaowangzntc@163.com.ORCID 0000-0002-6192-3170
Huili WangInstitute of Animal Science, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, China. wanghuili318@163.com.

Funding

Earmarked Fund for China Agriculture Research System CARS-36Natural Science Foundation of Shandong Province (Shandong Provincial Natural Science Foundation) ZR2023QC252
6 · The paper itself

Abstract

Asian water buffalo (Bubalus bubalis) is the fundamental livestock resource for local rural populations and holds a promising prospect of their milk and meat. Xuyi mountain (XYM) and Haizi (HZ) buffaloes from Yangtze valley comprises of species diversity of Asian water buffaloes. Current multi-omics enables identification of causal genes and elucidation of genetic regulatory mechanisms underlying complex traits in buffaloes. Here, we conducted the integrated analysis of metabolome and metagenome of rumen fluid, transcriptome and metabolome of blood, and whole genome sequence data from XYM (n = 7) and HZ (n = 10) male buffaloes. Our results revealed the apparent diversity of multi-layer omics profiles between two buffalo species. The built-up multi-omics database supports the discoveries of diversity in Asian water buffalo and potentially serves valuable resources for studying causal regulatory variants and their mechanisms.

Indexed as

BuffaloesAnimalsChinaMaleMetabolomeMetagenomeMultiomicsRumenTranscriptome

Identifiers

PMID39695240
PMCPMC11655523

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.