Evidence map›Paper›PMID 39695234›Full record

ArticleNature2025

Spatial transcriptomic clocks reveal cell proximity effects in brain ageing.

Eric D Sun, Olivia Y Zhou, Max Hauptschein, Nimrod Rappoport, Lucy Xu, Paloma Navarro Negredo, Ling Liu, Thomas A Rando, James Zou, Anne Brunet

Abstract read
In one paragraph

Article in Nature, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed.

  1. Article
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  11. Article
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  13. Article
  14. Review
  15. Senescence of T cells and organ aging.Inflammation and regeneration · 2026
    Review
  16. Immune signaling and function in neurodegeneration.The Journal of clinical investigation · 2026
    Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Eric D SunBiomedical Data Science Graduate Program, Stanford University, Stanford, CA, USA.ORCID 0000-0001-8805-9864
Olivia Y ZhouDepartment of Genetics, Stanford University, Stanford, CA, USA.ORCID 0000-0003-2107-2567
Max HauptscheinDepartment of Genetics, Stanford University, Stanford, CA, USA.ORCID 0000-0002-8478-568X
Nimrod RappoportDepartment of Genetics, Stanford University, Stanford, CA, USA.
Lucy XuDepartment of Genetics, Stanford University, Stanford, CA, USA.ORCID 0000-0001-6765-463X
Paloma Navarro NegredoDepartment of Genetics, Stanford University, Stanford, CA, USA.
Ling LiuDepartment of Neurology, Stanford University, Stanford, CA, USA.ORCID 0000-0002-0496-9551
Thomas A RandoDepartment of Neurology, Stanford University, Stanford, CA, USA.ORCID 0000-0001-5843-8564
James Zou *Department of Biomedical Data Science, Stanford University, Stanford, CA, USA. jamesz@stanford.edu.ORCID 0000-0001-8880-4764
Anne Brunet *Department of Genetics, Stanford University, Stanford, CA, USA. abrunet1@stanford.edu.ORCID 0000-0002-4608-6845

Funding

Wnt signaling in muscle stem cell agingP01AG036695 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Sean Curtis Bendall · 2011 to 2026
$29.3M
T cells in the aging brainR01AG071711 · NIA · STANFORD UNIVERSITY · PI BRUNET, ANNE · 2021 to 2025
$3.9M
Aging and Stem Cell ResilienceR01AG068667 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI RANDO, THOMAS A. · 2021 to 2025
$2.8M
Genomic Instability as A Driver of Stem Cell ExhaustionR01AG082764 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI THOMAS A. RANDO · 2023 to 2026
$1.7M
Mechanisms underlying a decline in neural stem cell migration during agingF30AG077799 · NIA · STANFORD UNIVERSITY · PI ZHOU, OLIVIA YU · 2023 to 2025
$124k
NIA NIH HHS F30 AG077799NIA NIH HHS P01 AG036695NIA NIH HHS R01 AG068667NIA NIH HHS R01 AG071711NIA NIH HHS R01 AG082764
6 · The paper itself

Abstract

Old age is associated with a decline in cognitive function and an increase in neurodegenerative disease risk

Indexed as

AgingBiological ClocksBrainCell CommunicationTranscriptomeAdultAgedAnimalsDeep LearningExerciseFemaleHumansMaleMiceMiddle AgedNeural Stem Cells

Identifiers

PMID39695234
PMCPMC11798877

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.