Evidence map›Paper›PMID 39695195›Full record

ArticleScientific data2024

De novo assembly of a near-complete genome of aquatic vegetable Zizania latifolia in the Yangtze River Basin.

Yao Zhao, Li-Bing Liao, Zi-Wei Zhu, Li-Dong Zhang, Zi-Dong Xiong, Zhi-Ping Song, Ning Yan, Ai-Wen Zhong, Jian Zhang, Cheng-Chuan Zhou and 1 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yao ZhaoKey Laboratory of Poyang Lake Environment and Resource Utilization, Ministry of Education, Center for Watershed Ecology, School of Life Sciences, Nanchang University, Nanchang, 330031, Jiangxi, P. R. China.
Li-Bing LiaoJiangxi Province Key Laboratory of Wetland Plant Resources Conservation and Utilization, Lushan Botanical Garden, Jiangxi Province and Chinese Academy of Sciences, Jiujiang, 332900, P. R. China.
Zi-Wei ZhuJiangxi Poyang Lake Wetland Conservation and Restoration National Permanent Scientific Research Base, National Ecosystem Research Station of Jiangxi Poyang Lake Wetland, Nanchang University, Nanchang, 330031, Jiangxi, P. R. China.
Li-Dong ZhangKey Laboratory of Poyang Lake Environment and Resource Utilization, Ministry of Education, Center for Watershed Ecology, School of Life Sciences, Nanchang University, Nanchang, 330031, Jiangxi, P. R. China.ORCID 0009-0000-8141-881X
Zi-Dong XiongKey Laboratory of Poyang Lake Environment and Resource Utilization, Ministry of Education, Center for Watershed Ecology, School of Life Sciences, Nanchang University, Nanchang, 330031, Jiangxi, P. R. China.
Zhi-Ping SongMinistry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, National Observations and Research Station for Wetland Ecosystems of the Yangtze Estuary, Fudan University, Shanghai, 200438, P. R. China.
Ning YanTobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao, 266101, P. R. China.
Ai-Wen ZhongJiangxi Province Key Laboratory of Wetland Plant Resources Conservation and Utilization, Lushan Botanical Garden, Jiangxi Province and Chinese Academy of Sciences, Jiujiang, 332900, P. R. China.
Jian ZhangKey Laboratory of Poyang Lake Environment and Resource Utilization, Ministry of Education, Center for Watershed Ecology, School of Life Sciences, Nanchang University, Nanchang, 330031, Jiangxi, P. R. China.
Cheng-Chuan ZhouJiangxi Academy of Forestry, Nanchang, 330013, Jiangxi, P. R. China. chengchuanzhou91@163.com.
Jun RongKey Laboratory of Poyang Lake Environment and Resource Utilization, Ministry of Education, Center for Watershed Ecology, School of Life Sciences, Nanchang University, Nanchang, 330031, Jiangxi, P. R. China. rong_jun@hotmail.com.ORCID 0000-0003-1408-2898

Funding

National Natural Science Foundation of China (National Science Foundation of China) 31600293National Natural Science Foundation of China (National Science Foundation of China) 32260091
6 · The paper itself

Abstract

The cultivated Zizania latifolia, an aquatic vegetable prevalent in the Yangtze River Basin, represents a unique plant-fungus complex whose domestication is associated with host-parasite co-evolution. In this study, we present a high-quality, chromosome-scale genome assembly of cultivated Z. latifolia. We employed PacBio long-read sequencing and Hi-C technology to generate ~578.42 Mb genome assembly, which contains 47.59% repeat sequences with a contig N50 of ~33.75 Mb. The contigs were successfully clustered into 17 chromosomal-sized scaffolds with a GC content of 43.26%, showing 98.39% completeness in BUSCO analysis. In total, we predicted 39,934 protein-coding genes, 88.79% of which could be functionally annotated. This genome assembly provides a valuable resource for unraveling Z. latifolia's domestication process, and advances our understanding of the evolutionary history and agricultural potential of Z. latifolia.

Indexed as

Genome, PlantVegetablesChinaPoaceaeRivers

Identifiers

PMID39695195
PMCPMC11655518

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.