Evidence map›Paper›PMID 39695176›Full record

ArticleCommunications biology2024

An acidic microenvironment produced by the V-type ATPase of Euprymna scolopes promotes specificity during Vibrio fischeri recruitment.

Alexis C Hargadon, Joani W Viliunas, Sabrina Koehler, Angus B Thies, Grischa Y Chen, Mark S Ladinsky, Jill Kuwabara, Viridiana Avila-Magana, Edward G Ruby, Martin Tresguerres and 1 more

Abstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Co-option of Lysosomal Machinery for Sponge Biosilicification.bioRxiv : the preprint server for biology · 2026
    Article
  3. SypC, a symbiont outer membrane vesicle protein, impacts the development of the squid-vibrio partnership.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Alexis C Hargadon *Division of Biosphere Sciences and Engineering, Carnegie Science, Pasadena, CA, USA.
Joani W Viliunas *Division of Biosphere Sciences and Engineering, Carnegie Science, Pasadena, CA, USA.ORCID 0000-0001-7795-4265
Sabrina KoehlerEvolutionary Ecology and Genetics, Zoological Institute, Kiel University, Kiel, Germany.
Angus B ThiesMarine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0002-3235-2436
Grischa Y ChenDivision of Biosphere Sciences and Engineering, Carnegie Science, Pasadena, CA, USA.ORCID 0000-0001-9786-323X
Mark S LadinskyDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.
Jill KuwabaraDivision of Biosphere Sciences and Engineering, Carnegie Science, Pasadena, CA, USA.
Viridiana Avila-MaganaDivision of Biosphere Sciences and Engineering, Carnegie Science, Pasadena, CA, USA.ORCID 0000-0001-6249-4761
Edward G RubyDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID 0000-0002-4112-4830
Martin TresguerresMarine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0002-7090-9266
Margaret J McFall-NgaiDivision of Biosphere Sciences and Engineering, Carnegie Science, Pasadena, CA, USA. mcfallng@caltech.edu.ORCID 0000-0002-6046-6238

Funding

Vibrio fischeri as a Model for Bacterial ColonizationR37AI050661 · NIAID · UNIVERSITY OF HAWAII AT MANOA · PI MARGARET J MC FALL-NGAI, Edward G Ruby · 2018 to 2026
$5.4M
Vibrio colonization determinants in symbiosisR01GM135254 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI MC FALL-NGAI, MARGARET J, RUBY, EDWARD G · 2020 to 2023
$1.9M
National Science Foundation (NSF) GRFPNational Science Foundation (NSF) GRFP 1842402NIAID NIH HHS R37 AI050661NIGMS NIH HHS R01 GM135254U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R37 AI50661U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R37-AI50661U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R01-GM135254
6 · The paper itself

Abstract

Animals often acquire their microbial symbionts from the environment, but the mechanisms underlying how specificity of the association is achieved are poorly understood. We demonstrate that the conserved proton pump, V-type ATPase (VHA), plays a key role in the establishment of the model light-organ symbiosis between the squid Euprymna scolopes and its bacterial partner, Vibrio fischeri. Recruitment of V. fischeri from the surrounding seawater is mediated by juvenile-specific ciliated fields on the organ's surface. These epithelia produce acidic mucus containing antimicrobials with low-pH optima, creating a chemical environment fostering specific recruitment of V. fischeri. We provide evidence that this critical acidic landscape is created by activity of VHA. VHA inhibition abolished epithelial-cell acidity, resulting in increased mucus pH and inefficient symbiont colonization. Thus, VHA provides a mechanistic link between host modulation of microenvironmental acidity, immune function, and selection of microbial symbionts, a strategy for specificity that may govern other symbioses.

Indexed as

Aliivibrio fischeriDecapodiformesSymbiosisAnimalsHydrogen-Ion ConcentrationVacuolar Proton-Translocating ATPasesVacuolar Proton-Translocating ATPases

Identifiers

PMID39695176
PMCPMC11655667

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.