Evidence map›Paper›PMID 39695163›Full record

ArticleScientific data2024

A new chromosome-level genome assembly and annotation of Cryptosporidium meleagridis.

Lasya R Penumarthi, Rodrigo P Baptista, Megan S Beaudry, Travis C Glenn, Jessica C Kissinger

Abstract read
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Emergence of zoonoticFrontiers in microbiology · 2026
    Article
  5. Article
  6. Article
  7. Current tropical medicine reports · 2024
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Lasya R PenumarthiInstitute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA.ORCID 0009-0000-6625-8619
Rodrigo P BaptistaInstitute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA.
Megan S BeaudryDepartment of Environmental Health Science, University of Georgia, Athens, GA, 30602, USA.ORCID 0000-0002-5707-8648
Travis C GlennInstitute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA.ORCID 0000-0001-7725-3637
Jessica C KissingerInstitute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA. jkissing@uga.edu.ORCID 0000-0002-6413-1101

Funding

Capturing the genomic variation present in Cryptosporidium and cryptosporidiosisR01AI148667 · NIAID · UNIVERSITY OF GEORGIA · PI GLENN, TRAVIS C., KISSINGER, JESSICA C · 2020 to 2023
$1.8M
NIAID NIH HHS R01 AI148667U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01AI14866
6 · The paper itself

Abstract

Cryptosporidium spp. are medically and scientifically relevant protozoan parasites that cause severe diarrheal illness in infants, immunosuppressed populations and many animals. Although most human Cryptosporidium infections are caused by C. parvum and C. hominis, there are several other human-infecting species including C. meleagridis, which are commonly observed in developing countries. Here, we annotated a hybrid long-read Oxford Nanopore Technologies and short-read Illumina genome assembly for C. meleagridis (CmTU1867) with DNA generated using multiple displacement amplification. The assembly was then compared to the previous C. meleagridis (CmUKMEL1) assembly and annotation and a recent telomere-to-telomere C. parvum genome assembly. The chromosome-level assembly is 9.2 Mb with a contig N50 of 1.1 Mb. Annotation revealed 3,919 protein-encoding genes. A BUSCO analysis indicates a completeness of 96.6%. The new annotation contains 166 additional protein-encoding genes and reveals high synteny to C. parvum IOWA II (CpBGF). The new C. meleagridis genome assembly is nearly gap-free and provides a valuable new resource for the Cryptosporidium community and future studies on evolution and host-specificity.

Indexed as

CryptosporidiumGenome, ProtozoanMolecular Sequence AnnotationChromosomesHumans

Identifiers

PMID39695163
PMCPMC11655656

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.