Evidence map›Paper›PMID 39694501›Full record

ArticleCell structure and function2025

A sensitive ERK fluorescent probe reveals the significance of minimal EGF-induced transcription.

Zhang Weisheng, Jun Nakayama, Yukino Inomata, Shigeki Higashiyama, Toru Hiratsuka

Abstract read
In one paragraph

Article in Cell structure and function, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Zhang WeishengDepartment of Molecular Oncology, Graduate School of Medicine, Osaka University.
Jun NakayamaDepartment of Oncogenesis and Growth Regulation, Research Center, Osaka International Cancer Institute.
Yukino InomataDepartment of Oncogenesis and Growth Regulation, Research Center, Osaka International Cancer Institute.
Shigeki HigashiyamaDepartment of Oncogenesis and Growth Regulation, Research Center, Osaka International Cancer Institute.
Toru HiratsukaDepartment of Molecular Oncology, Graduate School of Medicine, Osaka University.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Extracellular signal-regulated kinase (ERK) regulates multiple cellular functions through distinct activation patterns. Genetically encoded fluorescent probes are instrumental in dissecting the ERK activity dynamics in living cells. Here we modified a previously reported Förster resonance energy transfer (FRET) probe for ERK, EKAREN5 by replacing its mTurquoise2 and YPet sequences with mTurquoise-GL and a synonymous codon variant of YPet, respectively. The modified biosensor, EKAREN5-gl, showed an increased sensitivity to EGF-induced ERK activation responding to a very low dose (20 pg/ml) of EGF stimulation. We quantitatively characterized two FRET-based ERK probes, EKAREN5 and EKAREN5-gl, and a subcellular kinase translocation-based probe, ERK-KTR. We found the three biosensors differently respond to EGF stimulations with different intensity, duration, and latency. Furthermore, we investigated how the minimal EGF-induced ERK activation affects the downstream transcription in HeLa cells by comprehensive transcriptional analysis. We found the minimal ERK activation leads to a distinct transcriptional pattern from those induced by higher ERK activations. Our study highlights the significance of sensitive fluorescent probes to understand cellular signal dynamics and the role of minimal ERK activation in regulating transcription.Key words: fluorescent probe, ERK, FRET, KTR.

Indexed as

Epidermal Growth FactorExtracellular Signal-Regulated MAP KinasesFluorescent DyesTranscription, GeneticBiosensing TechniquesFluorescence Resonance Energy TransferHeLa CellsHumansEpidermal Growth FactorExtracellular Signal-Regulated MAP KinasesFluorescent DyesERKfluorescent probeFRETKTR

Identifiers

PMID39694501
PMCPMC12706509

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.