Evidence map›Paper›PMID 39693370›Full record

ArticlePloS one2024

Prevalence of non-tuberculous mycobacteria among people with acid-fast positive presumptive tuberculosis in Mali.

Aissata Boubakar Cisse, Anna S Dean, Armand Van Deun, Jelle Keysers, Willem-Bram De Rijk, Mourad Gumusboga, Hawa Samake, Seydou Arama, Bassirou Diarra, Ibrahim Djilla and 8 more

Abstract read
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Aissata Boubakar CisseNational Institute of Public Health, Bamako, Mali.ORCID 0000-0002-9242-3056
Anna S DeanWord Health Organization, Geneva, Switzerland.
Armand Van DeunMycobacteriology Unit, Institute of Tropical Medicine, Antwerp, Belgium.
Jelle KeysersMycobacteriology Unit, Institute of Tropical Medicine, Antwerp, Belgium.
Willem-Bram De RijkMycobacteriology Unit, Institute of Tropical Medicine, Antwerp, Belgium.
Mourad GumusbogaMycobacteriology Unit, Institute of Tropical Medicine, Antwerp, Belgium.
Hawa SamakeNational Institute of Public Health, Bamako, Mali.
Seydou AramaNational Institute of Public Health, Bamako, Mali.ORCID 0009-0009-0884-8886
Bassirou DiarraUniversity Clinical Research Center, Bamako, Mali.ORCID 0000-0002-1795-9379
Ibrahim DjillaNational Institute of Public Health, Bamako, Mali.
Fatoumata N CoulibalyNational Institute of Public Health, Bamako, Mali.
Hawa SimparaNational Institute of Public Health, Bamako, Mali.
Mamadou BertheNational Institute of Public Health, Bamako, Mali.
Khadidia OuattaraUniversity Teaching hospital of Point G, Bamako, Mali.
Yacouba TolobaUniversity Teaching hospital of Point G, Bamako, Mali.
Ibrehima GuindoNational Institute of Public Health, Bamako, Mali.
Bouke de JongMycobacteriology Unit, Institute of Tropical Medicine, Antwerp, Belgium.
Leen RigoutsMycobacteriology Unit, Institute of Tropical Medicine, Antwerp, Belgium.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundNon-tuberculous mycobacteria (NTM) are environmental agents that can cause opportunistic pulmonary disease in humans and animals, often misdiagnosed as tuberculosis (TB). In this study, we describe the cases of NTM identified during the first national anti-TB drug resistance survey conducted in Mali and explore associated risk factors.

methodsSputum was collected from people presenting for pulmonary TB diagnosis from April to December 2019, regardless of age. Microscopy-positive patients were enrolled and tested using the Xpert MTB/RIF assay. A patient who tested negative for the Mycobacterium tuberculosis complex (MTBC) was tested for the presence of mycobacteria by amplification of the IS6110 and 16SrRNA (16S) genes through double quantitative real-time PCR, followed by nested PCR and Sanger sequencing of the IS6110-negative samples for NTM species identification.

results1,418 sputum smear-positive patients were enrolled, including 1,199 new cases, 211 previously treated cases, and 8 whose previous treatment history was unknown. Based on the results of Xpert MTB/RIF assay and in-house PCR methods, 1,331 (93.9%) patients were positive for MTBC, 48 (3.4%) for NTM, and no species identification was possible for 39 (2.7%). Advanced age of 65 and over with an OR 8.8 (95% CI 2.3-33.2 and p = 0.001) and previous TB treatment with an OR 3.4 (95% CI 1.2-9.6 and p = 0.016) were the risk factors statistically associated with NTM detection. M. avium complex (MAC) was the predominant NTM species, detected in 20 cases.

conclusionDetection of NTM in people presumed to have TB is an ongoing challenge, confounding correct TB diagnosis. Concomitant use of microscopy and GeneXpert testing among at-risk individuals could improve patient management.

Indexed as

Mycobacterium Infections, NontuberculousNontuberculous MycobacteriaSputumAdolescentAdultAgedChildFemaleHumansMaleMaliMiddle AgedMycobacterium tuberculosisPrevalenceRisk FactorsTuberculosis

Identifiers

PMID39693370
PMCPMC11654988

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.