Evidence map›Paper›PMID 39692734›Full record

ArticleThe Journal of cell biology2025

A proteome-wide yeast degron collection for the dynamic study of protein function.

Rosario Valenti, Yotam David, Dunya Edilbi, Benjamin Dubreuil, Angela Boshnakovska, Yeynit Asraf, Tomer-Meir Salame, Ehud Sass, Peter Rehling, Maya Schuldiner

Abstract read
In one paragraph

Article in The Journal of cell biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Specific auxin and medium combinations altermicroPublication biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Rosario Valenti *Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0002-6093-1873
Yotam David *Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0003-4992-7045
Dunya EdilbiDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.ORCID 0009-0003-7411-2347
Benjamin DubreuilDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0002-8229-641X
Angela BoshnakovskaDepartment of Cellular Biochemistry, University Medical Center Göttingen, Göttingen, Germany.ORCID 0009-0008-3572-0223
Yeynit AsrafDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.ORCID 0009-0002-3499-5678
Tomer-Meir SalameDepartment of Life Sciences Core Facilities, Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0003-4260-8738
Ehud SassDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0003-4302-1496
Peter RehlingDepartment of Cellular Biochemistry, University Medical Center Göttingen, Göttingen, Germany.ORCID 0000-0001-5661-5272
Maya SchuldinerDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.ORCID 0000-0001-9947-115X

Funding

Blythe Brenden-Mann FoundationChan Zuckerberg Initiative 2023-331952Deutsche Forschungsgemeinschaft SFB1190European Union ERC CoG OnTarget 864068Max Planck SocietyMinerva FoundationWeizmann Institute of Science
6 · The paper itself

Abstract

Genome-wide collections of yeast strains, known as libraries, revolutionized the way systematic studies are carried out. Specifically, libraries that involve a cellular perturbation, such as the deletion collection, have facilitated key biological discoveries. However, short-term rewiring and long-term accumulation of suppressor mutations often obscure the functional consequences of such perturbations. We present the AID library which supplies "on demand" protein depletion to overcome these limitations. Here, each protein is tagged with a green fluorescent protein (GFP) and an auxin-inducible degron (AID), enabling rapid protein depletion that can be quantified systematically using the GFP element. We characterized the degradation response of all strains and demonstrated its utility by revisiting seminal yeast screens for genes involved in cell cycle progression as well as mitochondrial distribution and morphology. In addition to recapitulating known phenotypes, we also uncovered proteins with previously unrecognized roles in these central processes. Hence, our tool expands our knowledge of cellular biology and physiology by enabling access to phenotypes that are central to cellular physiology and therefore rapidly equilibrated.

Indexed as

ProteomeSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsDegronsGene LibraryGreen Fluorescent ProteinsIndoleacetic AcidsPhenotypeProteolysisGreen Fluorescent ProteinsIndoleacetic AcidsProteomeSaccharomyces cerevisiae Proteins

Identifiers

PMID39692734
PMCPMC11654244

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.