Evidence map›Paper›PMID 39692482›Full record

ReviewmSystems2025

Soil microbiome interventions for carbon sequestration and climate mitigation.

Gwyn A Beattie, Anna Edlund, Nwadiuto Esiobu, Jack Gilbert, Mette Haubjerg Nicolaisen, Janet K Jansson, Paul Jensen, Marco Keiluweit, Jay T Lennon, Jennifer Martiny and 5 more

Abstract readReview
In one paragraph

Review in mSystems, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
  2. Altering our (soils') future.EMBO reports · 2026
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. One Health, One Microbiome.Microbiome · 2025
    Review
  16. Article
  17. Rice Adaptation to Abiotic Stresses Caused by Soil Inorganic Elements.International journal of molecular sciences · 2025
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Gwyn A BeattieDepartment of Plant Pathology, Entomology and Microbiology, Iowa State University, Ames, Iowa, USA.
Anna EdlundOath Inc., Mill Valley, California, USA.
Nwadiuto EsiobuDepartment of Biological Sciences, Microbiome Innovation Cluster, Florida Atlantic University, Boca Raton, Florida, USA.
Jack GilbertDepartment of Pediatrics and Scripps Institution of Oceanography, UC San Diego School of Medicine, La Jolla, California, USA.
Mette Haubjerg NicolaisenDepartment of Plant and Environmental Sciences, University of Copenhagen, Copenhagen, Denmark.ORCID 0000-0002-0983-2466
Janet K JanssonBiological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, USA.
Paul JensenScripps Institution of Oceanography, University of California San Diego, La Jolla, California, USA.ORCID 0000-0003-2349-1888
Marco KeiluweitSoil Biogeochemistry Group, Faculty of Geosciences and the Environment, University of Lausanne, Lausanne, Switzerland.
Jay T LennonDepartment of Biology, Indiana University, Bloomington, Indiana, USA.
Jennifer MartinySchool of Biological Sciences, University of California, Irvine, Irvine, California, USA.ORCID 0000-0002-2415-1247
Vanessa R MinnisDepartment of Pediatrics and Scripps Institution of Oceanography, UC San Diego School of Medicine, La Jolla, California, USA.
Dianne NewmanDivision of Biology & Biological Engineering and Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, California, USA.ORCID 0000-0003-1647-1918
Raquel PeixotoBiological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.ORCID 0000-0002-9536-3132
Christopher SchadtBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.ORCID 0000-0001-8759-2448
Jan Roelof van der MeerDepartment of Fundamental Microbiology, University of Lausanne, Lausanne, Switzerland.ORCID 0000-0003-1485-3082

Funding

Swiss National Science Foundation NCCR Microbiomes 51NF40_180575 and 51NF40_225148US Department of Agriculture - National Institue of Food and Agriculture IOW04108
6 · The paper itself

Abstract

Mitigating climate change in soil ecosystems involves complex plant and microbial processes regulating carbon pools and flows. Here, we advocate for the use of soil microbiome interventions to help increase soil carbon stocks and curb greenhouse gas emissions from managed soils. Direct interventions include the introduction of microbial strains, consortia, phage, and soil transplants, whereas indirect interventions include managing soil conditions or additives to modulate community composition or its activities. Approaches to increase soil carbon stocks using microbially catalyzed processes include increasing carbon inputs from plants, promoting soil organic matter (SOM) formation, and reducing SOM turnover and production of diverse greenhouse gases. Marginal or degraded soils may provide the greatest opportunities for enhancing global soil carbon stocks. Among the many knowledge gaps in this field, crucial gaps include the processes influencing the transformation of plant-derived soil carbon inputs into SOM and the identity of the microbes and microbial activities impacting this transformation. As a critical step forward, we encourage broadening the current widespread screening of potentially beneficial soil microorganisms to encompass functions relevant to stimulating soil carbon stocks. Moreover, in developing these interventions, we must consider the potential ecological ramifications and uncertainties, such as incurred by the widespread introduction of homogenous inoculants and consortia, and the need for site-specificity given the extreme variation among soil habitats. Incentivization and implementation at large spatial scales could effectively harness increases in soil carbon stocks, helping to mitigate the impacts of climate change.

Indexed as

Carbon SequestrationClimate ChangeMicrobiotaSoilSoil MicrobiologyCarbonEcosystemGreenhouse GasesCarbonGreenhouse GasesSoilclimate changeinoculantsmicrobial communitiesplant growth promotionsoil carbon stockssoil healthsoil organic mattersoil transplants

Identifiers

PMID39692482
PMCPMC11748500

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.