Evidence map›Paper›PMID 39691254›Full record

ArticleEJHaem2024

Proteogenomic characterization of highly enriched viable leukemic blasts in acute myeloid leukemia: A SWOG report.

Jasmine Naru, Megan Othus, ChenWei Lin, Melinda A Biernacki, Marie Bleakley, Thomas R Chauncey, Harry P Erba, Min Fang, Matthew P Fitzgibbon, Phillip R Gafken and 15 more

Abstract read
In one paragraph

Article in EJHaem, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Jasmine NaruTranslational Science and Therapeutics Division Fred Hutch Seattle Washington USA.ORCID https://orcid.org/0000-0003-3957-4039
Megan OthusTranslational Science and Therapeutics Division Fred Hutch Seattle Washington USA.
ChenWei LinTranslational Science and Therapeutics Division Fred Hutch Seattle Washington USA.
Melinda A BiernackiTranslational Science and Therapeutics Division Fred Hutch Seattle Washington USA.
Marie BleakleyTranslational Science and Therapeutics Division Fred Hutch Seattle Washington USA.
Thomas R ChaunceyTranslational Science and Therapeutics Division Fred Hutch Seattle Washington USA.ORCID https://orcid.org/0000-0003-2815-7301
Harry P ErbaDuke Cancer Institute Durham North Carolina USA.
Min FangTranslational Science and Therapeutics Division Fred Hutch Seattle Washington USA.
Matthew P FitzgibbonGenomics and Bioinformatics Shared Resource Fred Hutch Seattle Washington USA.
Phillip R GafkenProteomics and Metabolomics Shared Resource Fred Hutch Seattle Washington USA.
Richard G IveyTranslational Science and Therapeutics Division Fred Hutch Seattle Washington USA.
Jacob J KennedyTranslational Science and Therapeutics Division Fred Hutch Seattle Washington USA.
Travis D LorentzenTranslational Science and Therapeutics Division Fred Hutch Seattle Washington USA.
Soheil MeshinchiTranslational Science and Therapeutics Division Fred Hutch Seattle Washington USA.
Anna MoseleyTranslational Science and Therapeutics Division Fred Hutch Seattle Washington USA.
Era L Pogosova-AgadjanyanTranslational Science and Therapeutics Division Fred Hutch Seattle Washington USA.ORCID https://orcid.org/0000-0002-9060-358X
Vivian M LiuTranslational Science and Therapeutics Division Fred Hutch Seattle Washington USA.
Jerald P RadichTranslational Science and Therapeutics Division Fred Hutch Seattle Washington USA.
Uliana J VoytovichTranslational Science and Therapeutics Division Fred Hutch Seattle Washington USA.
Pei WangDepartment of Genetics and Genomics Icahn School of Medicine at Mount Sinai New York New York USA.
Jeffrey R WhiteakerTranslational Science and Therapeutics Division Fred Hutch Seattle Washington USA.
Cheryl L WillmanDepartment of Laboratory Medicine and Pathology Mayo Clinic Comprehensive Cancer Center Rochester Minnesota USA.
Feinan WuGenomics and Bioinformatics Shared Resource Fred Hutch Seattle Washington USA.
Amanda G PaulovichTranslational Science and Therapeutics Division Fred Hutch Seattle Washington USA.
Derek L StirewaltTranslational Science and Therapeutics Division Fred Hutch Seattle Washington USA.

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Eric Collisson · 1985 to 2026
$296.4M
SWOG Network Group Operations Center of the NCTNU10CA180888 · NCI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI PRIMO N. LARA · 2014 to 2026
$152.1M
VIRUS-MEDIATED MYELOSUPPRESSIONP01CA018029 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI STEPHANIE J LEE · 1985 to 2026
$128.4M
SWOG Statistics & Data Management Center complex - extension supplement for GY06U10CA180819 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI MEGAN OTHUS · 2014 to 2026
$115.2M
SWOG U24 Funding for 2026-2027U24CA196175 · NCI · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI James Michael Rae, Nilsa Del Carmen Ramirez Milan · 2015 to 2026
$37.6M
Proteogenomic Studies aimed at understanding ovarian tumor responses to agents targeting the DNA damage response and translating this knowledge into clinical benefitU01CA214114 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BIRRER, MICHAEL, PAULOVICH, AMANDA G · 2017 to 2021
$8.4M
Proteogenomic studies to understand mechanisms and drivers of resistance to immunotherapiesU01CA271407 · NCI · FRED HUTCHINSON CANCER CENTER · PI Diwakar Davar, AMANDA G PAULOVICH · 2022 to 2026
$5.6M
A proteomics research specialist in developing targeted mass spectrometry methods for quantifying proteins important in cancerR50CA211499 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Jeff Whiteaker · 2016 to 2026
$2.8M
Novel Biomarkers to Risk-Stratify AML Patients with NPM1^Pos/FLT3-IT^Neg GenotypeR01CA190661 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI STIREWALT, DEREK L · 2016 to 2020
$2.7M
Discovery and Optimization of AML Prognostic BiomarkersR01CA160872 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI STIREWALT, DEREK L · 2012 to 2016
$2.5M
NCI NIH HHS P01 CA018029NCI NIH HHS P30 CA015704NCI NIH HHS R01 CA160872NCI NIH HHS R01 CA190661NCI NIH HHS R50 CA211499NCI NIH HHS U01 CA214114NCI NIH HHS U01 CA271407NCI NIH HHS U10 CA180819NCI NIH HHS U10 CA180888NCI NIH HHS U24 CA196175
6 · The paper itself

Abstract

Introduction: Acute myeloid leukemia (AML) remains one of the deadliest hematopoietic malignancies. A better understanding of the molecular biology governing AML may lead to improved risk stratification and facilitate the development of novel therapies. Proteins are responsible for much of the biology of cells. Several studies have examined the global proteome in bulk mononuclear cells (MNCs) from AML specimens, which are comprised a heterogenous population of cells at various stages of differentiation. Methods: Given the potential impact of the nonleukemic cells on protein expression profiles, we applied an integrative proteogenomic approach utilizing next-generation sequencing and mass spectrometry-based proteomics to identify novel protein biomarkers in unsorted MNCs and viable leukemic blasts (VLBs) isolated from blood and bone marrow specimens obtained at the time of AML diagnosis. Results: We identified significant differences in protein expression between VLBs and MNCs. Subsequent studies ( Conclusion: Together, the results provide insight into the biology of VLBs and demonstrate the gains derived from examining the proteome in addition to genome and transcriptome.

Indexed as

AMLhematological malignancyneoantigensproteogenomicstranscriptomics

Identifiers

PMID39691254
PMCPMC11647701

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.