Evidence map›Paper›PMID 39690740›Full record

ArticlePlant communications2025

Genomic analysis of Zhou8425B, a key founder parent, reveals its genetic contributions to elite agronomic traits in wheat breeding.

Guangwei Li, Yan Ren, Yuxin Yang, Shulin Chen, Jizhou Zheng, Xiaoqing Zhang, Junlong Li, Mengen Chen, Xiaonan Sun, Chunlei Lv and 19 more

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PubMed Full text at PMC Publisher
In one paragraph

Article in Plant communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

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13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

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3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

29 authors.

Guangwei LiState Key Laboratory of Wheat and Maize Crop Science, Henan Center for Crop Genomics and Rice Engineering, College of Agronomy, Longzi Lake Campus, Henan Agricultural University, Zhengzhou 450046, China; National Wheat Engineering Research Center, College of Agronomy, Henan Agricultural University, Longzi Lake Campus, Zhengzhou 450046, China.
Yan RenState Key Laboratory of Wheat and Maize Crop Science, Henan Center for Crop Genomics and Rice Engineering, College of Agronomy, Longzi Lake Campus, Henan Agricultural University, Zhengzhou 450046, China; National Wheat Engineering Research Center, College of Agronomy, Henan Agricultural University, Longzi Lake Campus, Zhengzhou 450046, China.
Yuxin YangState Key Laboratory of Wheat and Maize Crop Science, Henan Center for Crop Genomics and Rice Engineering, College of Agronomy, Longzi Lake Campus, Henan Agricultural University, Zhengzhou 450046, China; National Wheat Engineering Research Center, College of Agronomy, Henan Agricultural University, Longzi Lake Campus, Zhengzhou 450046, China.
Shulin ChenState Key Laboratory of Wheat and Maize Crop Science, Henan Center for Crop Genomics and Rice Engineering, College of Agronomy, Longzi Lake Campus, Henan Agricultural University, Zhengzhou 450046, China; National Wheat Engineering Research Center, College of Agronomy, Henan Agricultural University, Longzi Lake Campus, Zhengzhou 450046, China.
Jizhou ZhengHenan Fengdekang Seed Industry Co., Ltd, Zhengzhou 450001, China.
Xiaoqing ZhangNational Agro-Tech Extension and Service Center, Ministry of Agriculture and Rural Affairs, Beijing 100125, China.
Junlong LiState Key Laboratory of Wheat and Maize Crop Science, Henan Center for Crop Genomics and Rice Engineering, College of Agronomy, Longzi Lake Campus, Henan Agricultural University, Zhengzhou 450046, China; National Wheat Engineering Research Center, College of Agronomy, Henan Agricultural University, Longzi Lake Campus, Zhengzhou 450046, China.
Mengen ChenState Key Laboratory of Wheat and Maize Crop Science, Henan Center for Crop Genomics and Rice Engineering, College of Agronomy, Longzi Lake Campus, Henan Agricultural University, Zhengzhou 450046, China; National Wheat Engineering Research Center, College of Agronomy, Henan Agricultural University, Longzi Lake Campus, Zhengzhou 450046, China.
Xiaonan SunState Key Laboratory of Wheat and Maize Crop Science, Henan Center for Crop Genomics and Rice Engineering, College of Agronomy, Longzi Lake Campus, Henan Agricultural University, Zhengzhou 450046, China; National Wheat Engineering Research Center, College of Agronomy, Henan Agricultural University, Longzi Lake Campus, Zhengzhou 450046, China.
Chunlei LvState Key Laboratory of Wheat and Maize Crop Science, Henan Center for Crop Genomics and Rice Engineering, College of Agronomy, Longzi Lake Campus, Henan Agricultural University, Zhengzhou 450046, China; National Wheat Engineering Research Center, College of Agronomy, Henan Agricultural University, Longzi Lake Campus, Zhengzhou 450046, China.
Xiaode LiState Key Laboratory of Wheat and Maize Crop Science, Henan Center for Crop Genomics and Rice Engineering, College of Agronomy, Longzi Lake Campus, Henan Agricultural University, Zhengzhou 450046, China; National Wheat Engineering Research Center, College of Agronomy, Henan Agricultural University, Longzi Lake Campus, Zhengzhou 450046, China.
Bingbing ZhangState Key Laboratory of Wheat and Maize Crop Science, Henan Center for Crop Genomics and Rice Engineering, College of Agronomy, Longzi Lake Campus, Henan Agricultural University, Zhengzhou 450046, China; National Wheat Engineering Research Center, College of Agronomy, Henan Agricultural University, Longzi Lake Campus, Zhengzhou 450046, China.
Xiao SunState Key Laboratory of Wheat and Maize Crop Science, Henan Center for Crop Genomics and Rice Engineering, College of Agronomy, Longzi Lake Campus, Henan Agricultural University, Zhengzhou 450046, China; National Wheat Engineering Research Center, College of Agronomy, Henan Agricultural University, Longzi Lake Campus, Zhengzhou 450046, China.
Yujia LiState Key Laboratory of Wheat and Maize Crop Science, Henan Center for Crop Genomics and Rice Engineering, College of Agronomy, Longzi Lake Campus, Henan Agricultural University, Zhengzhou 450046, China; National Wheat Engineering Research Center, College of Agronomy, Henan Agricultural University, Longzi Lake Campus, Zhengzhou 450046, China.
Mingtian ZhaoState Key Laboratory of Wheat and Maize Crop Science, Henan Center for Crop Genomics and Rice Engineering, College of Agronomy, Longzi Lake Campus, Henan Agricultural University, Zhengzhou 450046, China; National Wheat Engineering Research Center, College of Agronomy, Henan Agricultural University, Longzi Lake Campus, Zhengzhou 450046, China.
Chunhao DongState Key Laboratory of Wheat and Maize Crop Science, Henan Center for Crop Genomics and Rice Engineering, College of Agronomy, Longzi Lake Campus, Henan Agricultural University, Zhengzhou 450046, China; National Wheat Engineering Research Center, College of Agronomy, Henan Agricultural University, Longzi Lake Campus, Zhengzhou 450046, China.
Jianwei TangState Key Laboratory of Wheat and Maize Crop Science, Henan Center for Crop Genomics and Rice Engineering, College of Agronomy, Longzi Lake Campus, Henan Agricultural University, Zhengzhou 450046, China; National Wheat Engineering Research Center, College of Agronomy, Henan Agricultural University, Longzi Lake Campus, Zhengzhou 450046, China.
Zhenpu HuangState Key Laboratory of Wheat and Maize Crop Science, Henan Center for Crop Genomics and Rice Engineering, College of Agronomy, Longzi Lake Campus, Henan Agricultural University, Zhengzhou 450046, China; National Wheat Engineering Research Center, College of Agronomy, Henan Agricultural University, Longzi Lake Campus, Zhengzhou 450046, China.
Yanyan PengHenan Fengdekang Seed Industry Co., Ltd, Zhengzhou 450001, China.
Dengbin GuHenan Fengdekang Seed Industry Co., Ltd, Zhengzhou 450001, China.
Zhiyong WangState Key Laboratory of Wheat and Maize Crop Science, Henan Center for Crop Genomics and Rice Engineering, College of Agronomy, Longzi Lake Campus, Henan Agricultural University, Zhengzhou 450046, China; National Wheat Engineering Research Center, College of Agronomy, Henan Agricultural University, Longzi Lake Campus, Zhengzhou 450046, China.
Hongyuan ZhengState Key Laboratory of Wheat and Maize Crop Science, Henan Center for Crop Genomics and Rice Engineering, College of Agronomy, Longzi Lake Campus, Henan Agricultural University, Zhengzhou 450046, China; National Wheat Engineering Research Center, College of Agronomy, Henan Agricultural University, Longzi Lake Campus, Zhengzhou 450046, China.
Cuilan ShiState Key Laboratory of Wheat and Maize Crop Science, Henan Center for Crop Genomics and Rice Engineering, College of Agronomy, Longzi Lake Campus, Henan Agricultural University, Zhengzhou 450046, China; National Wheat Engineering Research Center, College of Agronomy, Henan Agricultural University, Longzi Lake Campus, Zhengzhou 450046, China.
Guozhang KangState Key Laboratory of Wheat and Maize Crop Science, Henan Center for Crop Genomics and Rice Engineering, College of Agronomy, Longzi Lake Campus, Henan Agricultural University, Zhengzhou 450046, China; National Wheat Engineering Research Center, College of Agronomy, Henan Agricultural University, Longzi Lake Campus, Zhengzhou 450046, China.
Tiancun ZhengState Key Laboratory of Wheat and Maize Crop Science, Henan Center for Crop Genomics and Rice Engineering, College of Agronomy, Longzi Lake Campus, Henan Agricultural University, Zhengzhou 450046, China; National Wheat Engineering Research Center, College of Agronomy, Henan Agricultural University, Longzi Lake Campus, Zhengzhou 450046, China; Henan Fengdekang Seed Industry Co., Ltd, Zhengzhou 450001, China.
Feng ChenState Key Laboratory of Wheat and Maize Crop Science, Henan Center for Crop Genomics and Rice Engineering, College of Agronomy, Longzi Lake Campus, Henan Agricultural University, Zhengzhou 450046, China; National Wheat Engineering Research Center, College of Agronomy, Henan Agricultural University, Longzi Lake Campus, Zhengzhou 450046, China. Electronic address: fengchen@henau.edu.cn.
Daowen WangState Key Laboratory of Wheat and Maize Crop Science, Henan Center for Crop Genomics and Rice Engineering, College of Agronomy, Longzi Lake Campus, Henan Agricultural University, Zhengzhou 450046, China; National Wheat Engineering Research Center, College of Agronomy, Henan Agricultural University, Longzi Lake Campus, Zhengzhou 450046, China. Electronic address: dwwang@henau.edu.cn.
Kunpu ZhangState Key Laboratory of Wheat and Maize Crop Science, Henan Center for Crop Genomics and Rice Engineering, College of Agronomy, Longzi Lake Campus, Henan Agricultural University, Zhengzhou 450046, China; National Wheat Engineering Research Center, College of Agronomy, Henan Agricultural University, Longzi Lake Campus, Zhengzhou 450046, China. Electronic address: kpzhang@henau.edu.cn.
Guihong YinState Key Laboratory of Wheat and Maize Crop Science, Henan Center for Crop Genomics and Rice Engineering, College of Agronomy, Longzi Lake Campus, Henan Agricultural University, Zhengzhou 450046, China; National Wheat Engineering Research Center, College of Agronomy, Henan Agricultural University, Longzi Lake Campus, Zhengzhou 450046, China. Electronic address: yinguihong@henau.edu.cn.

Funding

Non-US Government Research Support type
6 · The paper itself

Abstract

High-quality genome information is essential for efficiently deciphering and improving crop traits. Here, we report a highly contiguous and accurate hexaploid genome assembly for the key wheat breeding parent Zhou8425B, an elite 1BL/1RS translocation line with durable adult plant resistance (APR) against yellow rust (YR) disease. By integrating HiFi and Hi-C sequencing reads, we have generated a 14.75-Gb genome assembly for Zhou8425B with a contig N50 of 70.94 and a scaffold N50 of 735.11 Mb. Comparisons with previously sequenced common wheat cultivars shed light on structural changes in the 1RS chromosome arm, which has been extensively used in wheat improvement. Interestingly, Zhou8425B 1RS carries more genes encoding AP2/ERF-ERF or B3 transcription factors than its counterparts in four previously sequenced wheat and rye genotypes. The Zhou8425B genome assembly aided in the fine mapping of a new APR locus (YrZH3BS) that confers resistance to YR disease and promotes grain yield under field conditions. Notably, pyramiding YrZH3BS with two previously characterized APR loci (YrZH22 and YrZH84) can further reduce YR severity and enhance grain yield, with the triple combination (YrZH3B + YrZH22 + YrZH84) having the greatest effect. Finally, the founder genotype effects of Zhou8425B were explored using publicly available genome resequencing data, which reveals the presence of important Zhou8425B genomic blocks in its derivative cultivars. Our data demonstrate the value of the Zhou8425B genome assembly for further study of the structural and functional characteristics of 1RS, the genetic basis of durable YR resistance, and founder genotype effects in wheat breeding. Our resources will facilitate the development of elite wheat cultivars through genomics-assisted breeding.

Indexed as

Genome, PlantPlant BreedingPlant DiseasesTriticumDisease Resistance1RS translocationadult plant resistancecommon wheatfounder genotype effectsgenome assemblyyellow rust disease

Identifiers

PMID39690740
PMCPMC11956103

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.