Evidence map›Paper›PMID 39690206›Full record

ArticleNature protocols2025

A consensus platform for antibody characterization.

Riham Ayoubi, Joel Ryan, Sara Gonzalez Bolivar, Charles Alende, Vera Ruiz Moleon, Maryam Fotouhi, Mona Alqazzaz, Kathleen Southern, Walaa Alshafie, Matt R Baker and 18 more

Abstract read
In one paragraph

Article in Nature protocols, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

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  3. Valorization ofCells · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors.

Riham AyoubiDepartment of Neurology and Neurosurgery, Structural Genomics Consortium, the Montreal Neurological Institute, McGill University, Montreal, Quebec, Canada.
Joel RyanAdvanced BioImaging Facility, McGill University, Montreal, Quebec, Canada.
Sara Gonzalez BolivarDepartment of Neurology and Neurosurgery, Structural Genomics Consortium, the Montreal Neurological Institute, McGill University, Montreal, Quebec, Canada.ORCID 0000-0002-4299-8281
Charles AlendeDepartment of Neurology and Neurosurgery, Structural Genomics Consortium, the Montreal Neurological Institute, McGill University, Montreal, Quebec, Canada.ORCID 0009-0005-4611-6134
Vera Ruiz MoleonDepartment of Neurology and Neurosurgery, Structural Genomics Consortium, the Montreal Neurological Institute, McGill University, Montreal, Quebec, Canada.
Maryam FotouhiDepartment of Neurology and Neurosurgery, Structural Genomics Consortium, the Montreal Neurological Institute, McGill University, Montreal, Quebec, Canada.
Mona AlqazzazStructural Genomics Consortium, University of Toronto, Toronto, Ontario, Canada.ORCID 0000-0001-9730-2328
Kathleen SouthernDepartment of Neurology and Neurosurgery, Structural Genomics Consortium, the Montreal Neurological Institute, McGill University, Montreal, Quebec, Canada.
Walaa AlshafieDepartment of Neurology and Neurosurgery, Structural Genomics Consortium, the Montreal Neurological Institute, McGill University, Montreal, Quebec, Canada.
Matt R Baker *Thermo Fisher Scientific, Carlsbad, CA, USA.
Alexander R Ball *GeneTex, Irvine, CA, USA.
Danielle Callahan *Proteintech Group, Rosemont, IL, USA.
Jeffery A Cooper *Bio-Techne, Minneapolis, MN, USA.
Katherine Crosby *Cell Signaling Technology, Danvers, MA, USA.
Kevin J Harvey *Aviva Systems Biology, San Diego, CA, USA.
Douglas W Houston *Developmental Studies Hybridoma Bank, Department of Biology, The University of Iowa, Iowa City, IA, USA.ORCID 0000-0002-7438-4655
Ravindran Kumaran *Abcam, Cambridge Biomedical Campus, Cambridge, UK.
Meghan Rego *Addgene, Watertown, MA, USA.ORCID 0000-0003-1991-2715
Christine Schofield *Revvity, Waterbeach, Cambridge, UK.
Hai Wu *ABclonal Technology, Woburn, MA, USA.ORCID 0000-0003-4333-6228
Michael S BiddleNIHR Respiratory Biomedical Research Centre, Department of Respiratory Sciences, University of Leicester, Leicester, UK.ORCID 0000-0002-9853-8815
Claire M BrownAdvanced BioImaging Facility, McGill University, Montreal, Quebec, Canada.ORCID 0000-0003-1622-663X
Richard A KahnDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA, USA.
Anita BandrowskiDepartment of Neuroscience, University of California San Diego, La Jolla, CA, USA.
Harvinder S VirkNIHR Respiratory Biomedical Research Centre, Department of Respiratory Sciences, University of Leicester, Leicester, UK.ORCID 0000-0002-9739-9593
Aled M EdwardsStructural Genomics Consortium, University of Toronto, Toronto, Ontario, Canada.
Peter S McPhersonDepartment of Neurology and Neurosurgery, Structural Genomics Consortium, the Montreal Neurological Institute, McGill University, Montreal, Quebec, Canada.
Carl LaflammeDepartment of Neurology and Neurosurgery, Structural Genomics Consortium, the Montreal Neurological Institute, McGill University, Montreal, Quebec, Canada. carl.laflamme@mcgill.ca.ORCID 0000-0001-5906-025X

Funding

TREAT AD Structural Biology CoreU54AG065187 · NIA · EMORY UNIVERSITY · PI ALLAN I LEVEY · 2019 to 2026
$69.7M
Validation of Antibody Reagents for 15 High Priority AMP-AD TargetsRF1AG057443 · NIA · SAGE BIONETWORKS · PI BRENNAN , PAUL, MANGRAVITE, LARA M · 2017 to 2019
$6.0M
From RRID to Resource Watch: A Knowledgebase of Biomedical Research ResourcesR24GM144308 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Anita ELZBIETA Bandrowski, Jeffrey S. Grethe · 2022 to 2026
$2.9M
Genome Canada (Génome Canada) OGI-210Michael J. Fox Foundation for Parkinson's Research (Michael J. Fox Foundation) 18331NIA NIH HHS RF1 AG057443NIA NIH HHS U54 AG065187NIGMS NIH HHS R24 GM144308U.S. Department of Health & Human Services | NIH | National Institute on Aging (U.S. National Institute on Aging) RF1AG057443
6 · The paper itself

Abstract

Antibody-based research applications are critical for biological discovery. Yet there are no industry standards for comparing the performance of antibodies in various applications. We describe a knockout cell line-based antibody characterization platform, developed and approved jointly by industry and academic researchers, that enables the systematic comparison of antibody performance in western blot, immunoprecipitation and immunofluorescence. The scalable protocols, which require minimal technological resources, consist of (1) the identification of appropriate cell lines for antibody characterization studies, (2) development/contribution of isogenic knockout controls, and (3) a series of antibody characterization procedures focused on the most common applications of antibodies in research. We provide examples of expected outcomes to guide antibody users in evaluating antibody performance. Central to our approach is advocating for transparent and open data sharing, enabling a community effort to identify specific antibodies for all human proteins. Mid-level graduate students with training in biochemistry and prior experience in cell culture and microscopy can complete the protocols for a specific protein within 1 month while working part-time on this effort. Antibody characterization is needed to meet standards for resource validation and data reproducibility, which are increasingly required by journals and funding agencies.

Indexed as

AntibodiesAnimalsBlotting, WesternCell LineConsensusFluorescent Antibody TechniqueGene Knockout TechniquesGuidelines as TopicHumansImmunoprecipitationAntibodies

Identifiers

PMID39690206
PMCPMC13054593

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.