Evidence map›Paper›PMID 39687668›Full record

ArticleJournal of pathology informatics2024

Improving the generalizability of white blood cell classification with few-shot domain adaptation.

Manon Chossegros, François Delhommeau, Daniel Stockholm, Xavier Tannier

Abstract read
In one paragraph

Article in Journal of pathology informatics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Manon ChossegrosSorbonne Université, Inserm, Universite Sorbonne Paris-Nord, Laboratoire d'Informatique Médicale et d'Ingénierie des Connaissances en e-Santé, LIMICS, 15 Rue de l'École de Médecine, 75006 Paris, France.
François DelhommeauSorbonne Université, Inserm, Centre de Recherche Saint-Antoine, CRSA, Paris 27 rue de Chaligny, 75012 Paris, France.
Daniel StockholmSorbonne Université, Inserm, Centre de Recherche Saint-Antoine, CRSA, Paris 27 rue de Chaligny, 75012 Paris, France.
Xavier TannierSorbonne Université, Inserm, Universite Sorbonne Paris-Nord, Laboratoire d'Informatique Médicale et d'Ingénierie des Connaissances en e-Santé, LIMICS, 15 Rue de l'École de Médecine, 75006 Paris, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The morphological classification of nucleated blood cells is fundamental for the diagnosis of hematological diseases. Many Deep Learning algorithms have been implemented to automatize this classification task, but most of the time they fail to classify images coming from different sources. This is known as "domain shift". Whereas some research has been conducted in this area, domain adaptation techniques are often computationally expensive and can introduce significant modifications to initial cell images. In this article, we propose an easy-to-implement workflow where we trained a model to classify images from two datasets, and tested it on images coming from eight other datasets. An EfficientNet model was trained on a source dataset comprising images from two different datasets. It was afterwards fine-tuned on each of the eight target datasets by using 100 or less-annotated images from these datasets. Images from both the source and the target dataset underwent a color transform to put them into a standardized color style. The importance of color transform and fine-tuning was evaluated through an ablation study and visually assessed with scatter plots, and an extensive error analysis was carried out. The model achieved an accuracy higher than 80% for every dataset and exceeded 90% for more than half of the datasets. The presented workflow yielded promising results in terms of generalizability, significantly improving performance on target datasets, whereas keeping low computational cost and maintaining consistent color transformations. Source code is available at: https://github.com/mc2295/WBC_Generalization.

Indexed as

ClassificationDeep learningDomain adaptationFew shot learningWhite blood cell

Identifiers

PMID39687668
PMCPMC11648780

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.