Evidence map›Paper›PMID 39684837›Full record

ArticleInternational journal of molecular sciences2024

An Unbiased Approach to Identifying Cellular Reprogramming-Inducible Enhancers.

Eleftheria Klagkou, Dimitrios Valakos, Spyros Foutadakis, Alexander Polyzos, Angeliki Papadopoulou, Giannis Vatsellas, Dimitris Thanos

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Oncogenic role and potential mechanisms of MYO1B in breast cancer.In vitro cellular & developmental biology. Animal · 2026
    Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Eleftheria KlagkouBiomedical Research Foundation, Academy of Athens (BRFAA), 4 Soranou Efesiou St., 11527 Athens, Greece.ORCID 0000-0003-3370-607X
Dimitrios ValakosBiomedical Research Foundation, Academy of Athens (BRFAA), 4 Soranou Efesiou St., 11527 Athens, Greece.ORCID 0000-0001-8905-9516
Spyros FoutadakisBiomedical Research Foundation, Academy of Athens (BRFAA), 4 Soranou Efesiou St., 11527 Athens, Greece.ORCID 0000-0001-9161-1605
Alexander PolyzosBiomedical Research Foundation, Academy of Athens (BRFAA), 4 Soranou Efesiou St., 11527 Athens, Greece.
Angeliki PapadopoulouBiomedical Research Foundation, Academy of Athens (BRFAA), 4 Soranou Efesiou St., 11527 Athens, Greece.
Giannis VatsellasBiomedical Research Foundation, Academy of Athens (BRFAA), 4 Soranou Efesiou St., 11527 Athens, Greece.ORCID 0000-0002-1631-1060
Dimitris ThanosBiomedical Research Foundation, Academy of Athens (BRFAA), 4 Soranou Efesiou St., 11527 Athens, Greece.ORCID 0000-0003-4288-3027

Funding

BODOSSAKI FOUNDATION SCHOLARSHIPEUROPEAN COMMITTEE BIOFOSEUROPEAN COMMITTEE STPredictaEUROPEAN ECONOMIC AREA EL0084General Secretariat for Research and Innovation (GSRI) MIS-05002755Greek General Secretariat for Research and Innovation (GSRI) #1567Greek General Secretariat for Research and Innovation (GSRI) #969Greek General Secretariat for Research and Innovation (GSRI) Emblematic Action Against COVID19Human Foundation for Research and Innovation 015999KMW OFFSETS PROGRAM BRFAAState Scholarships Foundation MIS-5000432
6 · The paper itself

Abstract

Cellular reprogramming of somatic cells towards induced pluripotency is a multistep stochastic process mediated by the transcription factors Oct4, Sox2, Klf4 and c-Myc (OSKM), which orchestrate global epigenetic and transcriptional changes. We performed a large-scale analysis of integrated ChIP-seq, ATAC-seq and RNA-seq data and revealed the spatiotemporal highly dynamic pattern of OSKM DNA binding during reprogramming. We found that OSKM show distinct temporal patterns of binding to different classes of pluripotency-related enhancers. Genes involved in reprogramming are regulated by the coordinated activity of multiple enhancers, which are sequentially bound by OSKM for strict transcriptional control. Based on these findings, we developed an unbiased approach to identify Reprogramming-Inducible Enhancers (RIEs), constructed enhancer-traps and isolated cells undergoing reprogramming in real time. We used a representative RIE taken from the

Indexed as

Cellular ReprogrammingEnhancer Elements, GeneticKruppel-Like Factor 4AnimalsChromatin Immunoprecipitation SequencingInduced Pluripotent Stem CellsKruppel-Like Transcription FactorsMiceOctamer Transcription Factor-3Proto-Oncogene Proteins c-mycSOXB1 Transcription FactorsTranscription FactorsKlf4 protein, mouseKruppel-Like Factor 4Kruppel-Like Transcription FactorsOctamer Transcription Factor-3Proto-Oncogene Proteins c-mycSOXB1 Transcription FactorsTranscription Factorscellular reprogrammingchromatin structureenhancersgenomicsiPSCsOSKMtranscriptional regulationtranscription factors

Identifiers

PMID39684837
PMCPMC11642860

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.