Evidence map›Paper›PMID 39684807›Full record

ArticleInternational journal of molecular sciences2024

Interaction of DDB1 with NBS1 in a DNA Damage Checkpoint Pathway.

Hoe Eun Lim, Hee Jung Lim, Hae Yong Yoo

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Hoe Eun LimDepartment of Health Sciences and Technology, Samsung Advanced Institute for Health Sciences and Technology, Sungkyunkwan University, Seoul 06351, Republic of Korea.
Hee Jung LimResearch Institute for Future Medicine, Samsung Medical Center, Seoul 06351, Republic of Korea.ORCID 0000-0003-2151-5102
Hae Yong YooDepartment of Health Sciences and Technology, Samsung Advanced Institute for Health Sciences and Technology, Sungkyunkwan University, Seoul 06351, Republic of Korea.

Funding

National Research Foundation of Korea NRF-2013R1A1A2060410
6 · The paper itself

Abstract

Various DNA damage checkpoint control mechanisms in eukaryotic cells help maintain genomic integrity. Among these, NBS1, a key component of the MRE11-RAD50-NBS1 (MRN) complex, is an essential protein involved in the DNA damage response (DDR). In this study, we discovered that DNA damage-binding protein 1 (DDB1) interacts with NBS1. DDB1 is a DDR sensor protein found in UV-induced DNA replication blocks. Through pull-down and immunoprecipitation assays conducted in Xenopus egg extracts and human cell lines, we demonstrated a specific interaction between NBS1 and DDB1. DDB1 was also found to associate with several proteins that interact with NBS1, including DNA topoisomerase 2-binding protein 1 (TopBP1) and Mediator of DNA damage checkpoint protein 1 (MDC1). Notably, the interaction between DDB1 and NBS1 is disrupted in MDC1-depleted egg extracts, indicating that MDC1 is necessary for this interaction. Furthermore, the depletion of DDB1 leads to increased Chk1 activation upon DNA damage. These novel findings regarding the interaction between NBS1 and DDB1 provide new insights into how DDB1 regulates DNA damage pathways.

Indexed as

Cell Cycle ProteinsCheckpoint Kinase 1DNA-Binding ProteinsDNA DamageNuclear ProteinsAdaptor Proteins, Signal TransducingAnimalsCarrier ProteinsHumansProtein BindingTrans-ActivatorsTumor Suppressor ProteinsXenopus laevisXenopus ProteinsAdaptor Proteins, Signal TransducingCarrier ProteinsCell Cycle ProteinsCheckpoint Kinase 1CHEK1 protein, humanChek1 protein, XenopusDDB1 protein, humanDNA-Binding ProteinsMDC1 protein, humanNBN protein, humanNBN protein, XenopusNuclear ProteinsTOPBP1 protein, humanTopBP1 protein, XenopusTrans-ActivatorsTumor Suppressor ProteinsXenopus ProteinsDDB1DNA damage checkpointMDC1NBS1TopBP1Xenopus egg extract

Identifiers

PMID39684807
PMCPMC11642328

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.