Evidence map›Paper›PMID 39684743›Full record

ArticleInternational journal of molecular sciences2024

Precision Thermostability Predictions: Leveraging Machine Learning for Examining Laccases and Their Associated Genes.

Ashutosh Tiwari, Dyah Ika Krisnawati, Widodo, Tsai-Mu Cheng, Tsung-Rong Kuo

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ashutosh TiwariInternational Ph.D. Program in Biomedical Engineering, College of Biomedical Engineering, Taipei Medical University, Taipei 11031, Taiwan.
Dyah Ika KrisnawatiDepartment of Nursing, Faculty of Nursing and Midwifery, Universitas Nahdlatul Ulama Surabaya, Surabaya 60237, East Java, Indonesia.ORCID 0000-0003-1707-5191
WidodoSekolah Tinggi Teknologi Pomosda, Nganjuk 64483, East Java, Indonesia.
Tsai-Mu ChengGraduate Institute for Translational Medicine, College of Medical Science and Technology, Taipei Medical University, Taipei 11031, Taiwan.ORCID 0000-0002-5712-3920
Tsung-Rong KuoInternational Ph.D. Program in Biomedical Engineering, College of Biomedical Engineering, Taipei Medical University, Taipei 11031, Taiwan.ORCID 0000-0003-4937-951X

Funding

National Science and Technology Council, Taiwan NSTC 112-2113-M-038-005National Science and Technology Council, Taiwan NSTC 112-2314-B-038-005
6 · The paper itself

Abstract

Laccases, multi-copper oxidases, play pivotal roles in the oxidation of a variety of substrates, impacting numerous biological functions and industrial processes. However, their industrial adoption has been limited by challenges in thermostability. This study employed advanced computational models, including random forest (RF) regressors and convolutional neural networks (CNNs), to predict and enhance the thermostability of laccases. Initially, the RF model estimated melting temperatures with a training mean squared error (MSE) of 13.98, and while it demonstrated high training accuracy (93.01%), the test and validation MSEs of 48.81 and 58.42, respectively, indicated areas for model optimization. The CNN model further refined these predictions, achieving lower training and validation MSEs, thus demonstrating enhanced capability in discerning complex patterns within genomic sequences indicative of thermostability. The integration of these models not only improved prediction accuracy but also provided insights into the critical determinants of enzyme stability, thereby supporting their broader industrial application. Our findings underscore the potential of machine learning in advancing enzyme engineering, with implications for enhancing industrial enzyme stability.

Indexed as

Enzyme StabilityLaccaseMachine LearningNeural Networks, ComputerTemperatureLaccasecomputational genomicsconvolutional neural networkenzyme engineeringlaccase thermostabilitymachine learningrandom forest regression

Identifiers

PMID39684743
PMCPMC11641568

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.