Evidence map›Paper›PMID 39684353›Full record

ArticleInternational journal of molecular sciences2024

Exploring the Replication and Pathogenic Characteristics of Alpha, Delta, and Omicron Variants of SARS-CoV-2.

Sakirul Khan, Takaaki Yahiro, Kazunori Kimitsuki, Takehiro Hashimoto, Keiko Matsuura, Shinji Yano, Kazuko Noguchi, Akane Sonezaki, Kaori Yoshizawa, Yoko Kumasako and 2 more

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Sakirul KhanResearch Center for Global and Local Infectious Diseases, Oita University, Yufu, Oita 879-5593, Japan.ORCID 0000-0001-5734-0899
Takaaki YahiroResearch Center for Global and Local Infectious Diseases, Oita University, Yufu, Oita 879-5593, Japan.ORCID 0000-0003-1094-4497
Kazunori KimitsukiResearch Center for Global and Local Infectious Diseases, Oita University, Yufu, Oita 879-5593, Japan.
Takehiro HashimotoDepartment of Microbiology, Faculty of Medicine, Oita University, Yufu, Oita 879-5593, Japan.
Keiko MatsuuraDepartment of Biomedicine, Faculty of Medicine, Oita University, Yufu, Oita 879-5593, Japan.ORCID 0000-0002-8006-5669
Shinji YanoInstitute for Research Management, Oita University, Yufu, Oita 879-5593, Japan.
Kazuko NoguchiDepartment of Microbiology, Faculty of Medicine, Oita University, Yufu, Oita 879-5593, Japan.
Akane SonezakiDepartment of Microbiology, Faculty of Medicine, Oita University, Yufu, Oita 879-5593, Japan.
Kaori YoshizawaDepartment of Microbiology, Faculty of Medicine, Oita University, Yufu, Oita 879-5593, Japan.
Yoko KumasakoResearch Center for Global and Local Infectious Diseases, Oita University, Yufu, Oita 879-5593, Japan.
Sheikh Mohammad Fazle AkbarResearch Center for Global and Local Infectious Diseases, Oita University, Yufu, Oita 879-5593, Japan.ORCID 0000-0003-4537-3313
Akira NishizonoResearch Center for Global and Local Infectious Diseases, Oita University, Yufu, Oita 879-5593, Japan.

Funding

Japan Society for the Promotion of Science 24K13414
6 · The paper itself

Abstract

The variants of concern (VOCs) of SARS-CoV-2 have exhibited different phenotypic characteristics in clinical settings which are yet to be fully explored. This study aimed to characterize the viral replication features of major VOCs of SARS-CoV-2 and their association with pathogenicity. The Alpha, Delta, and Omicron variants of SARS-CoV-2 isolated from the COVID-19 patients in Japan were propagated in VeroE6/TMPRSS2 cells. The viral replication and pathological features were evaluated by laser and electron microscopy at different time points. The results revealed that the Delta variant dominantly infected the VeroE6/TMPRSS2 cells and formed increased syncytia compared to the Alpha and Omicron variants. Relatively large numbers of virions and increased immunoreactivities of the SARS-CoV-2 N-protein were detected in the endoplasmic reticulum and intracellular vesicles of Delta-infected cells. Interestingly, the N-protein and virions were detected in the nucleus of Delta-infected cells, while such properties were not observed in the case of Alpha and Omicron variants. In addition, early nuclear membrane damage followed by severe cellular damage was prominent in Delta-infected cells. A unique mutation (G215C) in the N-protein of the Delta variant is thought to be associated with severe cell damage. In conclusion, this study highlights the distinct replicative and pathogenic characteristics of the Delta variant of SARS-CoV-2 compared to the Alpha and Omicron variants, shedding light on the potential mechanisms underlying its increased pathogenicity.

Indexed as

COVID-19SARS-CoV-2Virus ReplicationAnimalsChlorocebus aethiopsCoronavirus Nucleocapsid ProteinsEndoplasmic ReticulumHumansPhosphoproteinsVero CellsVirionCoronavirus Nucleocapsid Proteinsnucleocapsid phosphoprotein, SARS-CoV-2Phosphoproteinsnuclear localizationpathogenic potentialSARS-CoV-2variants of concernviral replication

Identifiers

PMID39684353
PMCPMC11641553

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.