Evidence map›Paper›PMID 39684209›Full record

ArticleInternational journal of molecular sciences2024

Calcium Indicators with Fluorescence Lifetime-Based Signal Readout: A Structure-Function Study.

Tatiana R Simonyan, Larisa A Varfolomeeva, Anastasia V Mamontova, Alexey A Kotlobay, Andrey Y Gorokhovatsky, Alexey M Bogdanov, Konstantin M Boyko

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Tatiana R SimonyanShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow 117997, Russia.ORCID 0000-0002-9291-877X
Larisa A VarfolomeevaA.N. Bach Institute of Biochemistry, Research Centre of Biotechnology of the Russian Academy of Sciences, Moscow 119071, Russia.
Anastasia V MamontovaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow 117997, Russia.ORCID 0000-0002-9255-6350
Alexey A KotlobayShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow 117997, Russia.
Andrey Y GorokhovatskyShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow 117997, Russia.
Alexey M BogdanovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow 117997, Russia.ORCID 0000-0002-5346-789X
Konstantin M BoykoA.N. Bach Institute of Biochemistry, Research Centre of Biotechnology of the Russian Academy of Sciences, Moscow 119071, Russia.ORCID 0000-0001-8229-189X

Funding

Ministry of Science and Higher Education of the Russian Federation 075-15-2021-1354
6 · The paper itself

Abstract

The calcium cation is a crucial signaling molecule involved in numerous cellular pathways. Beyond its role as a messenger or modulator in intracellular cascades, calcium's function in excitable cells, including nerve impulse transmission, is remarkable. The central role of calcium in nervous activity has driven the rapid development of fluorescent techniques for monitoring this cation in living cells. Specifically, genetically encoded calcium indicators (GECIs) are the most in-demand molecular tools in their class. In this work, we address two issues of calcium imaging by designing indicators based on the successful GCaMP6 backbone and the fluorescent protein BrUSLEE. The first indicator variant (GCaMP6s-BrUS), with a reduced, calcium-insensitive fluorescence lifetime, has potential in monitoring calcium dynamics with a high temporal resolution in combination with advanced microscopy techniques, such as light beads microscopy, where the fluorescence lifetime limits acquisition speed. Conversely, the second variant (GCaMP6s-BrUS-145), with a flexible, calcium-sensitive fluorescence lifetime, is relevant for static measurements, particularly for determining absolute calcium concentration values using fluorescence lifetime imaging microscopy (FLIM). To identify the structural determinants of calcium sensitivity in these indicator variants, we determine their spatial structures. A comparative structural analysis allowed the optimization of the GCaMP6s-BrUS construct, resulting in an indicator variant combining calcium-sensitive behavior in the time domain and enhanced molecular brightness. Our data may serve as a starting point for further engineering efforts towards improved GECI variants with fine-tuned fluorescence lifetimes.

Indexed as

CalciumMicroscopy, FluorescenceCalcium SignalingFluorescenceFluorescent DyesGreen Fluorescent ProteinsHEK293 CellsHumansStructure-Activity RelationshipCalciumFluorescent DyesGreen Fluorescent ProteinsFLIMfluorescence lifetimegenetically encoded indicatorsquantitative calcium imagingstructural analysis

Identifiers

PMID39684209
PMCPMC11640911

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.