Evidence map›Paper›PMID 39680962›Full record

ArticleEnvironmental microbiology2024

New Campylobacter Lineages in New Zealand Freshwater: Pathogenesis and Public Health Implications.

Adrian L Cookson, Sara Burgess, Anne C Midwinter, Jonathan C Marshall, Marie Moinet, Lynn Rogers, Ahmed Fayaz, Patrick J Biggs, Gale Brightwell

Abstract read
In one paragraph

Article in Environmental microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Adrian L CooksonAgResearch Limited, Hopkirk Research Institute, Palmerston North, New Zealand.ORCID https://orcid.org/0000-0002-8197-3386
Sara BurgessmEpiLab, School of Veterinary Sciences, Massey University, Palmerston North, New Zealand.
Anne C MidwintermEpiLab, School of Veterinary Sciences, Massey University, Palmerston North, New Zealand.
Jonathan C MarshallSchool of Mathematical and Computational Sciences, Massey University, Palmerston North, New Zealand.
Marie MoinetAgResearch Limited, Hopkirk Research Institute, Palmerston North, New Zealand.
Lynn RogersAgResearch Limited, Hopkirk Research Institute, Palmerston North, New Zealand.
Ahmed FayazmEpiLab, School of Veterinary Sciences, Massey University, Palmerston North, New Zealand.
Patrick J BiggsmEpiLab, School of Veterinary Sciences, Massey University, Palmerston North, New Zealand.
Gale BrightwellAgResearch Limited, Hopkirk Research Institute, Palmerston North, New Zealand.

Funding

Ministry of Business, Innovation and Employment
6 · The paper itself

Abstract

This study investigated the diversity of thermophilic Campylobacter species isolated from three New Zealand freshwater catchments affected by pastoral and urban activities. Utilising matrix-assisted laser desorption ionisation-time of flight and whole genome sequence analysis, the study identified Campylobacter jejuni (n = 46, 46.0%), C. coli (n = 39, 39%), C. lari (n = 4, 4.0%), and two novel Campylobacter species lineages (n = 11, 11%). Core genome sequence analysis provided evidence of prolonged persistence or continuous faecal shedding of closely related strains. The C. jejuni isolates displayed distinct sequence types (STs) associated with human, ruminant, and environmental sources, whereas the C. coli STs included waterborne ST3302 and ST7774. Recombination events affecting loci implicated in human pathogenesis and environmental persistence were observed, particularly in the cdtABC operon (encoding the cytolethal distending toxin) of non-human C. jejuni STs. A low diversity of antimicrobial resistance genes (aadE-Cc in C. coli), with genotype/phenotype concordance for tetracycline resistance (tetO) in three ST177 isolates, was noted. The data suggest the existence of two types of naturalised waterborne Campylobacter: environmentally persistent strains originating from waterbirds and new environmental species not linked to human campylobacteriosis. Identifying and understanding naturalised Campylobacter species is crucial for accurate waterborne public health risk assessments and the effective allocation of resources for water quality management.

Indexed as

CampylobacterFresh WaterAnimalsCampylobacter coliCampylobacter InfectionsCampylobacter jejuniDrug Resistance, BacterialGenome, BacterialGenotypeHumansNew ZealandPhylogenyPublic HealthWater MicrobiologyWhole Genome SequencingCampylobacter coliCampylobacter jejuniland‐usenaturalisedpathogenpersistentwater quality

Identifiers

PMID39680962
PMCPMC11649337

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.