Evidence map›Paper›PMID 39680481›Full record

ArticleJournal of cellular and molecular medicine2024

Exploring T Cell and NK Cell Involvement in Ankylosing Spondylitis Through Single-Cell Sequencing.

Tianyou Chen, Shengyu Ning, Jichong Zhu, Xinli Zhan, Chenxing Zhou, Chengqian Huang, Shaofeng Wu, Bin Zhang, Sitan Feng, Jiarui Chen and 3 more

Abstract read
In one paragraph

Article in Journal of cellular and molecular medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Tianyou ChenThe First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China.
Shengyu NingThe First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China.
Jichong ZhuThe First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China.
Xinli ZhanThe First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China.
Chenxing ZhouThe First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China.
Chengqian HuangThe First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China.
Shaofeng WuThe First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China.
Bin ZhangThe First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China.
Sitan FengThe First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China.
Jiarui ChenThe First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China.
Jiang XueThe First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China.
Zhenwei YangThe First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China.
Chong LiuThe First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, People's Republic of China.ORCID 0000-0003-2479-3001

Funding

Guangxi Young and Middle aged Teacher's Basic Ability Promoting Project 2023KY0115Joint Project on Regional High-Incidence Diseases Research of Guangxi Natural Science Foundation 2023JJA140227National Natural Science Foundation of China 8236090175the "Medical Excellence Award" Funded by the Creative Research Development Grant from the First Affiliated Hospital of Guangxi Medical University
6 · The paper itself

Abstract

To uncover the complex immune mechanisms driving inflammation in ankylosing spondylitis and lay the groundwork for identifying new therapeutic targets and innovative approaches, we conducted 10× single-cell sequencing on bone marrow cell samples collected from the vertebrae of three AS patients and three non-AS patients. Using single-cell sequencing data, we analysed the expression of differentially expressed genes (DEGs) by comparing AS patients with non-AS patients. Key genes among the related DEGs were identified through protein-protein interaction networks and hub gene screening and further validated using immunohistochemistry. We performed clustering and annotation of the single-cell sequencing data and externally validated the findings using the GSE232131 single-cell dataset. By integrating transcriptome data, we assessed the differential expression of immune cells in AS. Finally, we explored the interactions between immune cells in AS through cell communication analysis. The upregulated gene CD74 was identified as a hub gene in T cells in AS. Further research revealed the important relationship between T cells and NK cells in the fundamental processes of AS. Additionally, we found that the macrophage migration inhibitory factor signalling pathway is prominently expressed in the interactions among various cell types in AS.

Indexed as

Killer Cells, NaturalSingle-Cell AnalysisSpondylitis, AnkylosingT-LymphocytesAdultAntigens, Differentiation, B-LymphocyteCell CommunicationComputational BiologyFemaleGene Expression ProfilingGene Expression RegulationGene Regulatory NetworksHistocompatibility Antigens Class IIHumansMaleProtein Interaction MapsAntigens, Differentiation, B-LymphocyteHistocompatibility Antigens Class IIinvariant chainankylosing spondylitiscell communicationimmune cellimmune regulationsingle‐cell sequencing

Identifiers

PMID39680481
PMCPMC11648971

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.