Evidence map›Paper›PMID 39679949›Full record

ArticleGenetics2025

A previously reported bottleneck in human ancestry 900 kya is likely a statistical artifact.

Yun Deng, Rasmus Nielsen, Yun S Song

Abstract read
In one paragraph

Article in Genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. A general framework for branch length estimation in Ancestral Recombination Graphs.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Article
  5. Look past the cooperative eye hypothesis: reconsidering the evolution of human eye appearance.Biological reviews of the Cambridge Philosophical Society · 2025
    Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Yun DengCenter for Computational Biology, University of California, Berkeley, Berkeley, CA 94720, USA.ORCID 0000-0003-2802-2546
Rasmus NielsenCenter for Computational Biology, University of California, Berkeley, Berkeley, CA 94720, USA.ORCID 0000-0003-0513-6591
Yun S SongCenter for Computational Biology, University of California, Berkeley, Berkeley, CA 94720, USA.

Funding

Robust and efficient statistical inference methods for genomicsR35GM134922 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI SONG, YUN S · 2020 to 2024
$2.0M
Enabling Precision Genomics Using Adaptive VariationR01GM138634 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI NIELSEN, RASMUS · 2020 to 2023
$1.7M
Inference and application of graphs for genomic dataR35GM153400 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RASMUS NIELSEN · 2024 to 2026
$1.3M
NIGMS NIH HHS R01 GM138634NIGMS NIH HHS R35 GM134922NIGMS NIH HHS R35 GM153400NIH HHS R35-GM153400NIH HHS R35-GM153400 and R35-GM134922
6 · The paper itself

Abstract

It was recently reported that a severe ancient bottleneck occurred around 900 thousand years ago in the ancestry of African populations, while this signal is absent in non-African populations. Here, we present evidence to show that this finding is likely a statistical artifact.

Indexed as

Black PeopleGenetics, PopulationArtifactsHumansdemographic inferenceeffective population sizesite frequency spectrum

Identifiers

PMID39679949
PMCPMC11708913

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.