Evidence map›Paper›PMID 39679682›Full record

ArticlemBio2025

Overcoming barriers for investigating nickel-pincer nucleotide cofactor-related enzymes.

Jorge L Nevarez, Aiko Turmo, Santhosh Gatreddi, Swati Gupta, Jian Hu, Robert P Hausinger

Abstract read
In one paragraph

Article in mBio, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. A structural view of nickel-pincer nucleotide cofactor-related biochemistry.Critical reviews in biochemistry and molecular biology · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jorge L Nevarez *Department of Chemistry, Michigan State University, East Lansing, Michigan, USA.ORCID 0000-0002-7184-1400
Aiko Turmo *Department of Microbiology, Genetics, and Immunology, Michigan State University, East Lansing, Michigan, USA.ORCID 0000-0002-6380-8811
Santhosh GatreddiDepartment of Microbiology, Genetics, and Immunology, Michigan State University, East Lansing, Michigan, USA.ORCID 0000-0003-0862-614X
Swati GuptaDepartment of Microbiology, Genetics, and Immunology, Michigan State University, East Lansing, Michigan, USA.
Jian HuDepartment of Chemistry, Michigan State University, East Lansing, Michigan, USA.ORCID 0000-0001-6657-9826
Robert P HausingerDepartment of Microbiology, Genetics, and Immunology, Michigan State University, East Lansing, Michigan, USA.ORCID 0000-0002-3643-2054

Funding

Nickel-pincer nucleotide enzymesR01GM128959 · NIGMS · MICHIGAN STATE UNIVERSITY · PI ROBERT P HAUSINGER · 2019 to 2026
$2.7M
HHS | National Institutes of Health (NIH) GM128959National Science Foundation (NSF) DGE1848739NIGMS NIH HHS R01 GM128959
6 · The paper itself

Abstract

The nickel-pincer nucleotide (NPN) cofactor is a modified pyridinium mononucleotide that tri-coordinates nickel and is crucial for the activity of certain racemases and epimerases. LarB, LarC, and LarE are responsible for NPN synthesis, with the cofactor subsequently installed into LarA homologs. Hurdles for investigating the functional properties of such proteins arise from the difficulty of obtaining the active, NPN cofactor-loaded enzymes and in assaying their diverse reactivities. Here, we show that when the IMPORTANCE: Enzymes containing the nickel-pincer nucleotide (NPN) cofactor are prevalent in a wide range of microorganisms and catalyze various critical biochemical reactions, yet they remain underexplored due, in part, to limitations in current research methodologies. The two significant advancements described here, the heterologous production of active NPN-cofactor containing enzymes in

Indexed as

CoenzymesLactiplantibacillus plantarumNickelNucleotidesRacemases and EpimerasesBacterial ProteinsCircular DichroismCloning, MolecularEscherichia coliBacterial ProteinsCoenzymeslactate racemaseNickelNucleotidesRacemases and Epimerasescircular dichroism spectroscopycofactorepimerasenickelracemase

Identifiers

PMID39679682
PMCPMC11796402

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.