Evidence map›Paper›PMID 39678208›Full record

ArticleBioinformatics advances2024

The ISCB competency framework v. 3: a revised and extended standard for bioinformatics education and training.

Cath Brooksbank, Michelle D Brazas, Nicola Mulder, Russell Schwartz, Verena Ras, Sarah L Morgan, Marta Lloret Llinares, Patricia Carvajal López, Lee Larcombe, Amel Ghouila and 5 more

Abstract read
In one paragraph

Article in Bioinformatics advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Cath BrooksbankEMBL's European Bioinformatics Institute, Wellcome Genome Campus, Cambridge CB10 1SD, United Kingdom.ORCID https://orcid.org/0000-0001-9395-7001
Michelle D BrazasOntario Institute for Cancer Research, Toronto, ON M5G 0A3, Canada.
Nicola MulderComputational Biology Division, Department of Integrative Biomedical Sciences, Faculty of Health Sciences, University of Cape Town, Cape Town, 7925, South Africa.
Russell SchwartzDepartment of Biological Sciences and Computational Biology Department, Carnegie Mellon University, Pittsburgh, PA 15213, United States.ORCID https://orcid.org/0000-0002-4970-2252
Verena RasComputational Biology Division, Department of Integrative Biomedical Sciences, Faculty of Health Sciences, University of Cape Town, Cape Town, 7925, South Africa.
Sarah L MorganEMBL's European Bioinformatics Institute, Wellcome Genome Campus, Cambridge CB10 1SD, United Kingdom.
Marta Lloret LlinaresEMBL's European Bioinformatics Institute, Wellcome Genome Campus, Cambridge CB10 1SD, United Kingdom.ORCID https://orcid.org/0000-0002-8205-9799
Patricia Carvajal LópezEMBL's European Bioinformatics Institute, Wellcome Genome Campus, Cambridge CB10 1SD, United Kingdom.ORCID https://orcid.org/0000-0002-6937-9536
Lee LarcombeNexastem Ltd, St Neots, Cambridgeshire PE19 6AD, United Kingdom.
Amel GhouilaComputational Biology Division, Department of Integrative Biomedical Sciences, Faculty of Health Sciences, University of Cape Town, Cape Town, 7925, South Africa.
Tom HancocksEMBL's European Bioinformatics Institute, Wellcome Genome Campus, Cambridge CB10 1SD, United Kingdom.
Venkata SatagopamLuxembourg Centre For Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette L-4365, Luxembourg.ORCID https://orcid.org/0000-0002-6532-5880
Javier De Las RivasCancer Research Center (CiC-IBMCC), Consejo Superior de Investigaciones Científicas (CSIC) and University of Salamanca (USAL), Salamanca 37007, Spain.ORCID https://orcid.org/0000-0002-0984-9946
Gaston MazanduDivision of Human Genetics, Department of Pathology, Faculty of Health Sciences, University of Cape Town, Cape Town, 7925, South Africa.ORCID https://orcid.org/0000-0002-6441-8006
Bruno GaetaSchool of Computer Science and Engineering, UNSW Sydney, Sydney, NSW 2052, Australia.

Funding

H3ABioNet: informatics solutions for H3AfricaU24HG006941 · NHGRI · UNIVERSITY OF CAPE TOWN · PI MULDER, NICOLA · 2017 to 2021
$12.9M
NHGRI NIH HHS U24 HG006941
6 · The paper itself

Abstract

Motivation: Developing competency in the broad area of bioinformatics is challenging globally, owing to the breadth of the field and the diversity of its audiences for education and training. Course design can be facilitated by the use of a competency framework-a set of competency requirements that define the knowledge, skills and attitudes needed by individuals in (or aspiring to be in) a particular profession or role. These competency requirements can help to define curricula as they can inform both the content and level to which competency needs to be developed. The International Society for Computational Biology (ISCB) developed a list of bioinformatics competencies in 2014, and these have undergone several rounds of improvement. In consultation with a broad bioinformatics training community, these have now been further refined and extended to include knowledge skills and attitudes, and mappings to previous and other existing competency frameworks. Results: Here, we present version 3 of the ISCB competency framework. We describe how it was developed and how to access it, as well as providing some examples of how it has been used. Availability and implementation: The framework is openly accessible at https://competency.ebi.ac.uk/framework/iscb/3.0/competencies.

Identifiers

PMID39678208
PMCPMC11646570

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.