Evidence map›Paper›PMID 39677801›Full record

ArticlebioRxiv : the preprint server for biology2024

Early prediction of preeclampsia using the first trimester vaginal microbiome.

William F Kindschuh, George I Austin, Yoli Meydan, Heekuk Park, Julia A Urban, Emily Watters, Susan Pollak, George R Saade, Judith Chung, Brian M Mercer and 12 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

William F KindschuhProgram for Mathematical Genomics, Department of Systems Biology, Columbia University Irving Medical Center, New York, NY, USA.ORCID 0000-0002-7433-7808
George I AustinProgram for Mathematical Genomics, Department of Systems Biology, Columbia University Irving Medical Center, New York, NY, USA.ORCID 0000-0002-7834-4968
Yoli MeydanProgram for Mathematical Genomics, Department of Systems Biology, Columbia University Irving Medical Center, New York, NY, USA.ORCID 0009-0003-4597-3340
Heekuk ParkDivision of Infectious Diseases, Columbia University Irving Medical Center, New York, NY, USA.ORCID 0000-0001-5815-9717
Julia A UrbanProgram for Mathematical Genomics, Department of Systems Biology, Columbia University Irving Medical Center, New York, NY, USA.ORCID 0000-0002-6950-6435
Emily WattersDivision of Infectious Diseases, Columbia University Irving Medical Center, New York, NY, USA.
Susan PollakBiomarkers Core, Irving Institute for Clinical and Translational Research, Columbia University Irving Medical Center, New York, NY, USA.
George R SaadeDepartment of Obstetrics and Gynecology, Eastern Virginia Medical School, Norfolk, VA, USA.
Judith ChungDivision of Maternal-Fetal Medicine, Department of Obstetrics and Gynecology, University of California Irvine, CA, USA.
Brian M MercerDepartments of Obstetrics and Gynecology, Case Western Reserve University, Cleveland, OH, USA.
William A GrobmanThe Ohio State University, Columbus, OH, USA.
David M HaasDepartment of Obstetrics and Gynecology, Indiana University, Indianapolis, IN, USA.
Robert M SilverDepartment of Obstetrics and Gynecology, University of Utah, Salt Lake City, UT, USA.
Myrna SerranoDepartment of Microbiology and Immunology, School of Medicine, Virginia Commonwealth University, Richmond, VA, USA.
Gregory A BuckDepartment of Microbiology and Immunology, School of Medicine, Virginia Commonwealth University, Richmond, VA, USA.
Rebecca McNeilRTI International, Durham, NC, USA.
Renu NandakumarBiomarkers Core, Irving Institute for Clinical and Translational Research, Columbia University Irving Medical Center, New York, NY, USA.ORCID 0009-0009-9273-504X
Uma ReddyDepartment of Obstetrics and Gynecology, Columbia University Irving Medical Center, New York, NY, USA.
Ronald J WapnerDepartment of Obstetrics and Gynecology, Columbia University Irving Medical Center, New York, NY, USA.ORCID 0000-0003-0727-1244
Aya Brown KavProgram for Mathematical Genomics, Department of Systems Biology, Columbia University Irving Medical Center, New York, NY, USA.ORCID 0000-0003-2085-126X
Anne-Catrin UhlemannProgram for Mathematical Genomics, Department of Systems Biology, Columbia University Irving Medical Center, New York, NY, USA.ORCID 0000-0002-9798-4768
Tal KoremProgram for Mathematical Genomics, Department of Systems Biology, Columbia University Irving Medical Center, New York, NY, USA.ORCID 0000-0002-0609-0858

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Anil K Rustgi · 1985 to 2026
$115.3M
Training in Biomedical Informatics at Columbia UniversityT15LM007079 · NLM · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI NOEMIE ELHADAD, GEORGE M HRIPCSAK · 1992 to 2026
$28.9M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007367 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI REINER, STEVEN L · 1985 to 2021
$25.1M
Stress and Racial Disparities in Preeclampsia - Clues from DNA Methylomic ProfilingU01HL145358 · NHLBI · RESEARCH TRIANGLE INSTITUTE · PI Rebecca Boehm McNeil · 2020 to 2026
$24.6M
Indiana Clinical and Translational Sciences InstituteUL1TR001108 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI DENNE, SCOTT C., SHEKHAR, ANANTHA · 2013 to 2017
$23.3M
Preterm Birth in Nulliparous Women: An Understudied Population at Great RiskU10HD063036 · NICHD · RESEARCH TRIANGLE INSTITUTE · PI PARKER, CORETTE BREEDEN · 2010 to 2015
$19.5M
Institute for Clinical and Translational ScienceUL1TR000153 · NCATS · UNIVERSITY OF CALIFORNIA-IRVINE · PI COOPER, DAN M · 2012 to 2015
$12.1M
A Multi-'omic Analysis of the Vaginal Microbiome during PregnancyU54HD080784 · NICHD · VIRGINIA COMMONWEALTH UNIVERSITY · PI BUCK, GREGORY ALLEN, JEFFERSON, KIMBERLY KAY · 2014 to 2015
$8.2M
A large scale investigation of the vaginal metagenome and metabolome and their role in spontaneous preterm birthR01HD106017 · NICHD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI KOREM, TAL · 2021 to 2025
$3.6M
The role of the microbiome in HPV-associated cervical cancer in women with HIVR01CA245894 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI UHLEMANN, ANNE-CATRIN · 2020 to 2024
$2.3M
A large scale investigation of the vaginal ecosystem in preeclampsiaR01HD114715 · NICHD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Tal Korem · 2024 to 2026
$2.1M
Prevention of Preterm Birth in high Risk Nulliparous PatientsU10HD063047 · NICHD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI WAPNER, RONALD · 2010 to 2014
$1.9M
NCATS NIH HHS UL1 TR001108NCI NIH HHS P30 CA013696NCI NIH HHS R01 CA245894NHLBI NIH HHS U01 HL145358NICHD NIH HHS F30 HD108886NICHD NIH HHS R01 HD106017NICHD NIH HHS R01 HD114715NICHD NIH HHS U10 HD063020NICHD NIH HHS U10 HD063036NICHD NIH HHS U10 HD063037NICHD NIH HHS U10 HD063041NICHD NIH HHS U10 HD063046NICHD NIH HHS U10 HD063047NICHD NIH HHS U10 HD063048NICHD NIH HHS U10 HD063053NICHD NIH HHS U10 HD063072NICHD NIH HHS U54 HD080784NIGMS NIH HHS T32 GM007367NLM NIH HHS T15 LM007079
6 · The paper itself

Abstract

Preeclampsia is a severe obstetrical syndrome which contributes to 10-15% of all maternal deaths. Although the mechanisms underlying systemic damage in preeclampsia-such as impaired placentation, endothelial dysfunction, and immune dysregulation-are well studied, the initial triggers of the condition remain largely unknown. Furthermore, although the pathogenesis of preeclampsia begins early in pregnancy, there are no early diagnostics for this life-threatening syndrome, which is typically diagnosed much later, after systemic damage has already manifested. Here, we performed deep metagenomic sequencing and multiplex immunoassays of vaginal samples collected during the first trimester from 124 pregnant individuals, including 62 who developed preeclampsia with severe features. We identified multiple significant associations between vaginal immune factors, microbes, clinical factors, and the early pathogenesis of preeclampsia. These associations vary with BMI, and stratification revealed strong associations between preeclampsia and

Identifiers

PMID39677801
PMCPMC11642775

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.